Comparing GFF5097 FitnessBrowser__WCS417:GFF5097 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
61% identity, 100% coverage: 1:241/241 of query aligns to 2:241/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
56% identity, 99% coverage: 1:239/241 of query aligns to 3:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
56% identity, 99% coverage: 1:239/241 of query aligns to 3:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
56% identity, 99% coverage: 1:239/241 of query aligns to 3:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
56% identity, 99% coverage: 1:239/241 of query aligns to 3:241/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
51% identity, 99% coverage: 1:239/241 of query aligns to 1:239/240 of 4ymuJ
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
50% identity, 95% coverage: 7:236/241 of query aligns to 12:253/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
50% identity, 95% coverage: 7:236/241 of query aligns to 8:249/258 of 1b0uA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 100% coverage: 1:241/241 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
36% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
36% identity, 100% coverage: 1:241/241 of query aligns to 2:247/344 of 6cvlD
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 100% coverage: 1:240/241 of query aligns to 17:252/378 of P69874
Sites not aligning to the query:
3d31A Modbc from methanosarcina acetivorans (see paper)
37% identity, 98% coverage: 1:237/241 of query aligns to 1:229/348 of 3d31A
Sites not aligning to the query:
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
40% identity, 85% coverage: 15:219/241 of query aligns to 22:226/648 of P75831
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
41% identity, 85% coverage: 14:217/241 of query aligns to 20:223/226 of 5xu1B
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
35% identity, 91% coverage: 17:236/241 of query aligns to 42:263/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
35% identity, 91% coverage: 17:236/241 of query aligns to 42:263/382 of 7aheC
Sites not aligning to the query:
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
35% identity, 88% coverage: 7:217/241 of query aligns to 10:220/229 of 6z67B
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
35% identity, 88% coverage: 7:217/241 of query aligns to 10:220/230 of 6z4wA
>GFF5097 FitnessBrowser__WCS417:GFF5097
MVQISGLNKWYGNFQVLHAIDLTVSQGERIVLCGPSGSGKSTLIRCISRLEVADSGVIRA
LDADLGKPSPARHKALREIGMVFQNFNLFPHMTVLQNCTLAPMSVRGFSRKRAEAHARHF
LDKVGIENQANKYPSQLSGGQQQRVAIARALCMEPKIMLFDEPTSALDPEMVKEVLDVIV
TLADTGMTMLCVTHEMGFARQVAERVLFLDAGRIVEDLPPEQFFTAPKSDRAQAFLAQIH
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Lawrence Berkeley National Laboratory