Comparing GFF511 FitnessBrowser__Phaeo:GFF511 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
5iaiA Crystal structure of abc transporter solute binding protein arad_9887 from agrobacterium radiobacter k84, target efi-510945 in complex with ribitol
21% identity, 78% coverage: 57:507/577 of query aligns to 1:390/399 of 5iaiA
>GFF511 FitnessBrowser__Phaeo:GFF511
MRKYLLSAAAVIAVVAGQAAYADEAAAKKWIDEEFQPSVLTKDEQLSEMQWFIKASEPFS
GMEINVLSEGIPTHSYESEVLTKAFEEITGIKVNHQILGEGEVVQAVQTQMQTKRNLYDA
YVNDSDLIGTHSRLQLAYNLTDMMEGDFFDVTNPELDLGDFMGTQFTTGPDGDLYQLPDQ
QFANLYWFRKDWFDREDLQAAFKEKYGYDLGVPVNWSAYEDIAEFFSNDVKEIDGTTIFG
HMDYGKRAPDLGWRMTDAWLSMAGAGSKGEPNGVPIDEWGIRMEADSCNPAGASVTRGGA
ANGPAAVYAIRKWDEWLRKFAPPGAASYDFYQSLPALAQGNVAQQIFWYTAFTADMVKPQ
SEGNNTVDGEGNPLWRMAPSPHGPYWEEGQKVGYQDVGSWTFLKSTPMDRAKAAWLYAQF
VVSKTVDVKKSHVGLTFIRDSSVNHESFTERAPKLGGLVEFYRSPDRVAWSPTGVNVPDY
PKLAQIWWQQIGDVNSGAFTPQEAMDRLAEEMDITMARMQRADEQASVYGGCGPRLNEEK
DAEWWYANGGAKPKLENEKPQGQTVNYDELVARWASE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory