Comparing GFF5294 FitnessBrowser__WCS417:GFF5294 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
29% identity, 52% coverage: 62:213/294 of query aligns to 87:236/296 of P68183
>GFF5294 FitnessBrowser__WCS417:GFF5294
MKRFSFSSFMLVAGLLFIYLPMLILVIYSFNESKLVTVWGGWSIKWYVGLLDNTQLMGSV
ARSLEIACYTAVAAVALGTLAAFVLTRISQFKGRTLFGGLVTAPLVMPEVITGLSLLLLF
VAMAQMIGWPQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVF
FLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAV
ASLILLAVSLVTFLVWFFSRRAEEHRKKAIQQAIEEAAADGWKQPDKRRAPAPV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory