SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF5294 FitnessBrowser__WCS417:GFF5294 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
29% identity, 52% coverage: 62:213/294 of query aligns to 87:236/296 of P68183

query
sites
P68183
R
 
N
S
 
S
L
 
V
E
 
K
I
 
V
A
 
A
C
 
G
Y
 
I
T
 
S
A
 
A
V
 
I
A
 
G
A
 
I
V
 
V
A
 
A
L
 
L
G
 
S
T
 
T
L
 
T
A
 
C
A
 
A
F
 
Y
V
 
A
L
 
F
T
 
A
R
 
R
I
 
M
S
 
-
Q
 
R
F
 
F
K
 
P
G
 
G
R
 
K
-
 
A
T
 
T
L
 
L
F
 
L
G
 
K
G
 
G
L
 
M
V
 
L
T
 
I
A
 
F
P
 
Q
L
 
M
V
 
-
M
 
F
P
 
P
E
 
A
V
 
V
I
 
L
T
 
S
G
 
L
L
 
V
S
 
A
L
 
L
L
 
Y
L
 
A
L
 
L
F
 
F
V
 
D
A
 
R
M
 
L
A
 
G
Q
 
E
-
 
Y
-
 
I
-
 
P
M
 
F
I
 
I
G
 
G
W
 
L
P
 
N
Q
 
T
E
 
H
R
 
G
G
 
G
I
 
V
V
 
I
T
 
-
I
 
-
W
 
-
I
 
F
A
 
A
H
 
Y
T
 
L
T
 
G
F
 
G
C
 
I
A
 
A
A
 
L
Y
 
H
V
 
V
A
 
W
V
 
T
V
 
I
V
 
-
S
 
K
A
 
G
R
 
Y
L
 
F
R
 
E
E
 
T
L
 
I
D
 
D
L
 
S
S
 
S
I
 
L
E
 
E
E
|
E
A
 
A
A
|
A
M
 
A
D
 
L
L
 
D
G
|
G
A
 
A
R
 
T
P
 
P
W
 
W
K
 
Q
V
 
A
F
 
F
F
 
R
L
 
L
I
 
V
T
 
L
I
 
L
P
|
P
M
 
L
I
 
S
A
 
V
P
 
P
S
 
I
L
 
L
A
 
A
A
 
V
G
 
V
G
 
F
M
 
I
M
 
L
S
 
S
F
 
F
A
 
I
L
 
A
S
 
A
L
 
I
D
 
T
D
 
E
L
 
V
V
 
P
L
 
V
A
 
A
S
 
S
F
 
L
V
 
L

Query Sequence

>GFF5294 FitnessBrowser__WCS417:GFF5294
MKRFSFSSFMLVAGLLFIYLPMLILVIYSFNESKLVTVWGGWSIKWYVGLLDNTQLMGSV
ARSLEIACYTAVAAVALGTLAAFVLTRISQFKGRTLFGGLVTAPLVMPEVITGLSLLLLF
VAMAQMIGWPQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVF
FLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAV
ASLILLAVSLVTFLVWFFSRRAEEHRKKAIQQAIEEAAADGWKQPDKRRAPAPV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory