Comparing GFF5313 FitnessBrowser__WCS417:GFF5313 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 17 hits to proteins with known functional sites (download)
7rsfA Acetylornithine deacetylase from escherichia coli
50% identity, 98% coverage: 3:378/382 of query aligns to 2:378/380 of 7rsfA
Q8P8J5 N-acetyl-L-citrulline deacetylase; ACDase; Acetylcitrulline deacetylase; EC 3.5.1.- from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) (see paper)
28% identity, 93% coverage: 22:375/382 of query aligns to 14:363/366 of Q8P8J5
2f7vA Structure of acetylcitrulline deacetylase complexed with one co (see paper)
27% identity, 93% coverage: 22:375/382 of query aligns to 15:358/360 of 2f7vA
7uoiA Crystallographic structure of dape from enterococcus faecium
25% identity, 86% coverage: 49:378/382 of query aligns to 46:382/383 of 7uoiA
5vo3A Crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) (see paper)
25% identity, 94% coverage: 5:363/382 of query aligns to 4:364/380 of 5vo3A
P44514 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 3 papers)
25% identity, 94% coverage: 6:363/382 of query aligns to 1:360/377 of P44514
4o23A Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from neisseria meningitidis mc58 (see paper)
25% identity, 92% coverage: 13:363/382 of query aligns to 12:360/376 of 4o23A
4pqaA Crystal structure of succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 in complex with the inhibitor captopril (see paper)
25% identity, 92% coverage: 13:363/382 of query aligns to 12:360/375 of 4pqaA
7t1qA Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
24% identity, 89% coverage: 36:376/382 of query aligns to 28:373/377 of 7t1qA
7lgpB Dape enzyme from shigella flexneri
24% identity, 89% coverage: 36:376/382 of query aligns to 30:374/377 of 7lgpB
5xoyA Crystal structure of lysk from thermus thermophilus in complex with lysine (see paper)
28% identity, 91% coverage: 30:375/382 of query aligns to 20:335/341 of 5xoyA
3pfoA Crystal structure of a putative acetylornithine deacetylase (rpa2325) from rhodopseudomonas palustris cga009 at 1.90 a resolution
29% identity, 56% coverage: 56:268/382 of query aligns to 82:301/426 of 3pfoA
Sites not aligning to the query:
4h2kA Crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae (see paper)
31% identity, 36% coverage: 5:143/382 of query aligns to 2:139/258 of 4h2kA
Sites not aligning to the query:
3rzaA Crystal structure of a tripeptidase (sav1512) from staphylococcus aureus subsp. Aureus mu50 at 2.10 a resolution
23% identity, 65% coverage: 98:346/382 of query aligns to 100:340/373 of 3rzaA
Sites not aligning to the query:
4op4B Crystal structure of the catalytic domain of dape protein from v.Cholerea in the zn bound form (see paper)
33% identity, 35% coverage: 35:167/382 of query aligns to 27:165/265 of 4op4B