Comparing GFF5352 FitnessBrowser__WCS417:GFF5352 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
57% identity, 97% coverage: 2:238/245 of query aligns to 1:236/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
55% identity, 96% coverage: 3:238/245 of query aligns to 3:238/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
55% identity, 96% coverage: 3:238/245 of query aligns to 3:238/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
55% identity, 96% coverage: 3:238/245 of query aligns to 3:238/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
55% identity, 96% coverage: 3:238/245 of query aligns to 3:238/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
52% identity, 96% coverage: 3:238/245 of query aligns to 1:236/240 of 4ymuJ
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
51% identity, 96% coverage: 4:238/245 of query aligns to 7:253/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
51% identity, 96% coverage: 4:238/245 of query aligns to 3:249/258 of 1b0uA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
42% identity, 91% coverage: 19:241/245 of query aligns to 21:244/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
41% identity, 91% coverage: 19:241/245 of query aligns to 22:245/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
41% identity, 91% coverage: 19:241/245 of query aligns to 22:245/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
41% identity, 91% coverage: 19:241/245 of query aligns to 22:245/344 of 3tuiC
Sites not aligning to the query:
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
41% identity, 88% coverage: 1:216/245 of query aligns to 1:220/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
41% identity, 88% coverage: 1:216/245 of query aligns to 1:220/592 of 5lj7A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 97% coverage: 2:239/245 of query aligns to 16:249/378 of P69874
Sites not aligning to the query:
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
36% identity, 96% coverage: 4:238/245 of query aligns to 11:252/257 of P0AAH0
Sites not aligning to the query:
8hprD Lpqy-sugabc in state 4 (see paper)
37% identity, 94% coverage: 11:240/245 of query aligns to 10:236/362 of 8hprD
8hprC Lpqy-sugabc in state 4 (see paper)
37% identity, 94% coverage: 11:240/245 of query aligns to 10:236/363 of 8hprC
8hplC Lpqy-sugabc in state 1 (see paper)
37% identity, 91% coverage: 19:240/245 of query aligns to 17:234/384 of 8hplC
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
39% identity, 91% coverage: 23:244/245 of query aligns to 46:269/382 of 7ahhC
Sites not aligning to the query:
>GFF5352 FitnessBrowser__WCS417:GFF5352
MPLLRISALHKYYGDHHVLKGIDLTVEEGQVVAIIGRSGSGKSTLLRTLNGLESINDGVI
EVDGEYLDAARADLRSLRQKVGMVFQQFNLFPHLTVGENVMLAPQVVQKVPKAKAAQLAK
QMLERVGLGEKFDAFPDRLSGGQQQRVAIARALAMSPKVLLCDEITSALDPELVNEVLSV
VRQLAKDGMTLIMVTHEMRFAREVGDKLVFMHQGKVHEVGDPKVLFASPQTAELANFIGS
TEQSH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory