Comparing GFF5509 FitnessBrowser__WCS417:GFF5509 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
40% identity, 72% coverage: 69:267/276 of query aligns to 15:213/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
40% identity, 72% coverage: 69:267/276 of query aligns to 15:213/214 of 4ymwC
>GFF5509 FitnessBrowser__WCS417:GFF5509
MTAFPTPPKPPVNASRLQRLLGFRTRLYLTWAALFCLFASFFLSFDLKFSIILDKLPNLV
GLHLAPNGFLQGAALTVFLCLCAIVASSILGFVTALGRLSKSAVAFGIASFYASFFRGTP
LLIQILLIYLGLPQLGLVPGAIVAGIIALSLNYGAYLSEIFRAGILGVPHGQREAALALG
MRDSVIFWHVTLPQAMRTIIPPATNQFISMLKDSSLISVMGVWEVMFLAQSYGRSSYRYI
EMLTTAAIIYWVMSLGLELIQARMERHYGKGYVRRG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory