Comparing GFF561 FitnessBrowser__WCS417:GFF561 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
36% identity, 92% coverage: 14:252/260 of query aligns to 5:260/265 of P07821
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
34% identity, 79% coverage: 23:228/260 of query aligns to 17:224/240 of 4ymuJ
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 80% coverage: 23:229/260 of query aligns to 18:225/241 of 4u00A
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 80% coverage: 23:229/260 of query aligns to 21:230/343 of P30750
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 78% coverage: 23:225/260 of query aligns to 19:223/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 78% coverage: 23:225/260 of query aligns to 19:223/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 78% coverage: 23:225/260 of query aligns to 19:223/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 78% coverage: 23:225/260 of query aligns to 19:223/242 of 2oljA
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
31% identity, 79% coverage: 25:229/260 of query aligns to 44:252/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
31% identity, 79% coverage: 25:229/260 of query aligns to 44:252/382 of 7aheC
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 80% coverage: 23:229/260 of query aligns to 22:231/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 80% coverage: 23:229/260 of query aligns to 22:231/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
32% identity, 80% coverage: 23:229/260 of query aligns to 22:231/344 of 6cvlD
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
30% identity, 79% coverage: 25:229/260 of query aligns to 44:252/260 of 7ahdC
Sites not aligning to the query:
Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
31% identity, 80% coverage: 21:229/260 of query aligns to 18:226/276 of Q5M243
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
28% identity, 82% coverage: 25:237/260 of query aligns to 20:233/240 of 6mjpA
8bmpA Cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to atp and adp (see paper)
30% identity, 82% coverage: 23:234/260 of query aligns to 20:235/278 of 8bmpA
Sites not aligning to the query:
5d3mA Folate ecf transporter: amppnp bound state (see paper)
30% identity, 82% coverage: 23:234/260 of query aligns to 23:238/280 of 5d3mA
Sites not aligning to the query:
3d31A Modbc from methanosarcina acetivorans (see paper)
32% identity, 80% coverage: 20:228/260 of query aligns to 13:216/348 of 3d31A
Sites not aligning to the query:
Q5M244 Energy-coupling factor transporter ATP-binding protein EcfA2; ECF transporter A component EcfA2; EC 3.6.3.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
30% identity, 97% coverage: 4:255/260 of query aligns to 3:250/280 of Q5M244
>GFF561 FitnessBrowser__WCS417:GFF561
MTSLTLTDLNWSPTGHCHHQFHLRDANLQVGAGEFVGLIGPNGSGKTSLLRCAYRFSKPA
RGDVLLDHQNVWKQSAKWCAQRVAVVLQEFPEAFGLRVDEVVAMGRTPHKGLLDGDTLHD
QQLIQQALESVGMQGFEDHAFATLSGGEKQRVILARALAQQPQLLILDEPTNHLDPRYQL
ELLKLVKRLNIGTLASIHDLNLAAAFCDRLYVIDHGCIVASGTPHKVLTAELLRDVFDVD
ALIDTHPLSGYPRITWITQP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory