SitesBLAST
Comparing GFF620 FitnessBrowser__Phaeo:GFF620 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
45% identity, 93% coverage: 30:470/474 of query aligns to 29:465/465 of 3pm9A
- active site: A149 (= A153), L159 (≠ N163)
- binding flavin-adenine dinucleotide: P69 (= P70), Q70 (≠ Y71), G71 (= G72), G72 (= G73), N73 (≠ G74), T74 (= T75), G75 (= G76), L76 (= L77), G79 (= G80), Q80 (= Q81), L91 (= L95), L133 (= L137), G134 (≠ A138), A135 (= A139), C139 (≠ A143), T140 (≠ R144), G142 (= G146), G143 (= G147), N144 (≠ T148), S146 (≠ A150), T147 (= T151), A149 (= A153), G150 (= G154), E200 (= E204), G201 (= G205), G204 (= G208), I205 (= I209), I206 (= I210), E423 (= E428), H424 (= H429), N460 (= N465)
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
31% identity, 97% coverage: 7:466/474 of query aligns to 28:492/496 of P39976
Sites not aligning to the query:
- 17 modified: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
36% identity, 94% coverage: 26:471/474 of query aligns to 28:466/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (≠ Y38), P76 (= P70), Q77 (≠ Y71), G78 (= G72), G79 (= G73), N80 (≠ G74), T81 (= T75), G82 (= G76), M83 (≠ L77), G86 (= G80), S87 (≠ Q81), L140 (= L137), G141 (≠ A138), A142 (= A139), C146 (≠ A143), H147 (≠ R144), G149 (= G146), G150 (= G147), N151 (≠ T148), A153 (= A150), T154 (= T151), A156 (= A153), G157 (= G154), G158 (= G155), E207 (= E204), G208 (= G205), I212 (= I209), I213 (= I210), T338 (≠ P337), H382 (= H382), E423 (= E428), H424 (= H429), N460 (= N465)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
36% identity, 94% coverage: 26:471/474 of query aligns to 27:465/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R333), T337 (≠ P337), K348 (≠ S348), Y379 (≠ F380), H381 (= H382), H388 (= H389), N390 (= N391), H423 (= H429)
- binding flavin-adenine dinucleotide: W39 (≠ Y38), P75 (= P70), Q76 (≠ Y71), G77 (= G72), G78 (= G73), N79 (≠ G74), T80 (= T75), G81 (= G76), M82 (≠ L77), G85 (= G80), S86 (≠ Q81), L139 (= L137), G140 (≠ A138), A141 (= A139), C145 (≠ A143), H146 (≠ R144), G148 (= G146), G149 (= G147), N150 (≠ T148), A152 (= A150), T153 (= T151), A155 (= A153), G156 (= G154), G157 (= G155), E206 (= E204), G207 (= G205), I211 (= I209), I212 (= I210), H381 (= H382), E422 (= E428), H423 (= H429), N459 (= N465)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
36% identity, 94% coverage: 26:471/474 of query aligns to 27:465/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (≠ Y38), P75 (= P70), Q76 (≠ Y71), G77 (= G72), G78 (= G73), N79 (≠ G74), T80 (= T75), G81 (= G76), M82 (≠ L77), G85 (= G80), S86 (≠ Q81), L139 (= L137), G140 (≠ A138), A141 (= A139), C145 (≠ A143), H146 (≠ R144), G148 (= G146), G149 (= G147), N150 (≠ T148), A152 (= A150), T153 (= T151), A155 (= A153), G156 (= G154), G157 (= G155), E206 (= E204), G207 (= G205), I211 (= I209), I212 (= I210), H381 (= H382), E422 (= E428), H423 (= H429), N459 (= N465)
- binding (2s)-2-hydroxypentanedioic acid: M82 (≠ L77), R333 (= R333), T337 (≠ P337), K348 (≠ S348), Y379 (≠ F380), H381 (= H382), H388 (= H389), N390 (= N391), H423 (= H429)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
36% identity, 94% coverage: 26:471/474 of query aligns to 27:465/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (≠ Y38), P75 (= P70), Q76 (≠ Y71), G77 (= G72), G78 (= G73), N79 (≠ G74), T80 (= T75), G81 (= G76), G85 (= G80), S86 (≠ Q81), L139 (= L137), G140 (≠ A138), A141 (= A139), C145 (≠ A143), H146 (≠ R144), G148 (= G146), G149 (= G147), N150 (≠ T148), A152 (= A150), T153 (= T151), A155 (= A153), G156 (= G154), G157 (= G155), E206 (= E204), G207 (= G205), G210 (= G208), I211 (= I209), I212 (= I210), H381 (= H382), E422 (= E428), H423 (= H429), N459 (= N465)
- binding d-malate: M82 (≠ L77), R333 (= R333), T337 (≠ P337), K348 (≠ S348), Y379 (≠ F380), H381 (= H382), H388 (= H389), E422 (= E428), H423 (= H429)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
36% identity, 94% coverage: 26:471/474 of query aligns to 27:465/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: M82 (≠ L77), R333 (= R333), T337 (≠ P337), K348 (≠ S348), Y379 (≠ F380), H381 (= H382), H388 (= H389), N390 (= N391), E422 (= E428), H423 (= H429)
- binding flavin-adenine dinucleotide: W39 (≠ Y38), P75 (= P70), Q76 (≠ Y71), G77 (= G72), G78 (= G73), N79 (≠ G74), T80 (= T75), G81 (= G76), M82 (≠ L77), G85 (= G80), S86 (≠ Q81), L139 (= L137), G140 (≠ A138), A141 (= A139), C145 (≠ A143), H146 (≠ R144), G148 (= G146), G149 (= G147), N150 (≠ T148), A152 (= A150), T153 (= T151), A155 (= A153), G156 (= G154), G157 (= G155), E206 (= E204), G207 (= G205), I211 (= I209), I212 (= I210), H381 (= H382), E422 (= E428), H423 (= H429), N459 (= N465)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
36% identity, 94% coverage: 26:471/474 of query aligns to 80:518/521 of Q8N465