Comparing GFF667 FitnessBrowser__Phaeo:GFF667 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
37% identity, 98% coverage: 4:323/326 of query aligns to 2:328/330 of P0AAH4
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
37% identity, 96% coverage: 5:316/326 of query aligns to 4:316/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
37% identity, 96% coverage: 5:316/326 of query aligns to 3:305/310 of 4fwiB
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
40% identity, 78% coverage: 4:258/326 of query aligns to 2:246/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
40% identity, 78% coverage: 4:258/326 of query aligns to 2:246/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
39% identity, 78% coverage: 4:258/326 of query aligns to 2:246/250 of 7z16I
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 72% coverage: 24:259/326 of query aligns to 20:244/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 72% coverage: 24:259/326 of query aligns to 21:245/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 72% coverage: 24:259/326 of query aligns to 21:245/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 72% coverage: 24:259/326 of query aligns to 21:245/344 of 6cvlD
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 78% coverage: 4:256/326 of query aligns to 1:236/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
32% identity, 71% coverage: 28:259/326 of query aligns to 22:241/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
32% identity, 71% coverage: 28:259/326 of query aligns to 22:241/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
32% identity, 71% coverage: 28:259/326 of query aligns to 22:241/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
32% identity, 71% coverage: 28:259/326 of query aligns to 22:241/242 of 2oljA
Sites not aligning to the query:
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
36% identity, 72% coverage: 4:239/326 of query aligns to 3:212/218 of 7w78A
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
36% identity, 72% coverage: 4:239/326 of query aligns to 3:212/216 of 7w79A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 74% coverage: 11:252/326 of query aligns to 3:232/240 of 4ymuJ
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
34% identity, 65% coverage: 22:234/326 of query aligns to 18:223/232 of 1f3oA
Sites not aligning to the query:
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
32% identity, 69% coverage: 5:228/326 of query aligns to 3:215/226 of 5xu1B
>GFF667 FitnessBrowser__Phaeo:GFF667
MTDPVLSIRDLVVEIPTRHARLCATDKVSYDIAPGEILGVVGESGAGKSMAGNAVIGLLN
PPARITGGEIRLNGQRIDNLPREKMRRLRGKEIGMIFQDPLTSLNPLLRIGDQLTETMME
HLELTKPEARARAIAALEEVGIPAASERIDSYPHEFSGGMRQRVVIALALCAEPSLIIAD
EPTTALDVSVQAQIIALLKRLCRERGTAVMLITHDMGVIAEAADRVAVMYAGRMAEIGDV
RDVVTRPRHPYTDGLMGSTPSASAGQHRLRQIPGAMPRLHSLPPGCAFSPRCERANERCR
NSPPPTLEADNGRSACWHAIKLEGAA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory