Comparing GFF696 FitnessBrowser__Phaeo:GFF696 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
Q6LX42 Sodium/alanine symporter AgcS; Alanine permease; Alanine/glycine:cation symporter from Methanococcus maripaludis (strain S2 / LL) (see paper)
38% identity, 89% coverage: 56:514/514 of query aligns to 17:449/453 of Q6LX42
6csfM Crystal structure of sodium/alanine symporter agcs with d-alanine bound (see paper)
38% identity, 89% coverage: 56:514/514 of query aligns to 3:429/431 of 6csfM
6cseM Crystal structure of sodium/alanine symporter agcs with l-alanine bound (see paper)
38% identity, 89% coverage: 56:514/514 of query aligns to 3:429/431 of 6cseM
>GFF696 FitnessBrowser__Phaeo:GFF696
MNTLSKAAALAVPGALGLSGPLMAQTIDEKVNELFASSTGWFVNFIFSPFPGTSFPWIVA
WLVIAATIFTIYFGLIQFRAFPHSISLVKGDYSDPNDAGEVSHFQALATALSGTVGLGNI
AGVAVAVGIGGPGATFWMILAGLMGMASKFTECTLGVKYRNEYPDGTVSGGPMYYMTKGF
AARGLPGGKFMAVLFSIFCILGAFGGGNMFQANQAHAQLTNVLGDYPGWITGVIFAGVVF
AVIIGGLKSIASVTEKVVPFMGVLYVLTALVIILLNFDKIGWAFGQIFDGAFTGLGVAGG
MVGALIQGFKRAAFSNEAGVGSAAIAHSAVRTKEPITEGFVSLLEPFIDTVVICTMTALV
IIITGQLVSDPETGLYVLNEAGSAIQTVDGNSGVALTSAAFSSSFGWFKYILAIAVILFA
FSTMISWSYYGLKAWTFLFGESKTTELVFKVIFCLFVIIGAAASLGPVIDFSDAAIFAMA
VVNIVALYFLMPIVKGELNSYLARLKSGEIKKYQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory