SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF84 Psest_0084 TRAP transporter, 4TM/12TM fusion protein to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 27% coverage: 184:366/674 of query aligns to 60:241/427 of 8b01B

query
sites
8b01B
F
 
F
I
 
V
L
 
L
F
 
T
G
 
G
S
 
H
F
 
L
L
 
M
E
 
N
Q
 
S
A
 
A
G
 
G
M
 
I
I
 
T
K
 
E
L
 
R
F
 
I
T
 
F
D
 
N
F
 
F
A
 
A
M
 
K
G
 
A
L
 
M
F
 
V
G
 
G
H
 
H
K
 
I
L
 
T
G
 
G
G
 
S
P
 
L
A
 
G
K
 
H
V
 
V
S
 
N
V
 
I
V
 
L
S
 
A
S
 
S
A
 
L
L
 
L
M
 
F
G
x
S
T
 
G
I
 
M
T
x
S
G
|
G
S
 
S
G
 
A
V
 
L
A
 
A
N
 
D
V
 
A
V
 
G
T
 
G
T
 
L
G
 
G
Q
 
Q
F
 
L
T
 
E
I
 
I
P
 
K
L
 
S
M
 
M
K
 
R
R
 
D
F
 
A
G
 
K
Y
 
Y
R
 
D
P
 
D
A
 
D
F
 
F
A
 
A
G
 
G
G
 
G
V
 
L
E
 
T
A
 
A
T
 
A
S
 
S
S
 
C
M
 
I
G
 
I
S
x
G
Q
 
P
I
 
L
M
x
V
P
|
P
P
|
P
V
 
S
M
 
I
G
 
P
A
 
L
V
 
V
A
 
I
F
 
Y
I
 
G
M
 
V
A
 
V
E
 
S
T
 
N
I
 
T
N
 
S
V
 
I
P
 
G
F
 
A
V
 
L
E
 
F
I
 
L
A
 
A
K
 
G
A
 
A
A
 
-
L
 
-
I
 
I
P
 
P
A
 
G
L
 
L
L
 
L
Y
 
C
F
 
C
G
 
I
S
 
A
V
 
L
F
 
C
W
 
I
M
 
M
V
 
T
H
 
Y
L
 
F
E
 
I
A
 
A
K
 
K
R
 
K
A
 
R
G
 
G
L
 
Y
K
 
M
G
 
T
L
 
L
P
 
P
K
 
R
D
 
A
E
 
S
C
 
R
P
 
K
S
 
E
A
 
R
M
 
L
A
 
I
A
 
A
V
 
F
K
 
R
E
 
D
R
 
A
W
 
F
Y
 
L
L
 
S
L
 
L
I
 
L
P
 
T
L
 
P
V
 
F
V
 
I
L
 
I
V
 
I
W
 
G
L
 
G
L
 
I
F
 
F
S
 
S
G
 
G
R
 
K
-
 
F
T
 
T
P
 
P
M
 
T
F
 
E
A
 
A
G
 
A
T
 
I
I
 
I

Sites not aligning to the query:

Query Sequence

>GFF84 Psest_0084 TRAP transporter, 4TM/12TM fusion protein
MSESQGLHASPSEWPRALFYVALLFSIYQIVTAAFHPVSSQVLRAGHVGFLLLLVFLCYP
ARGNGKPFQPVAWLLGLAGFATFFYQWYFEADLIQRSGDMTTADMVVGLTLIVLVFEAAR
RVMGIALPIICALFLAYGLLGEYLPGDLAHRGYYLDQIVNQLSFGTEGLYGTPTYVSATY
IFLFILFGSFLEQAGMIKLFTDFAMGLFGHKLGGPAKVSVVSSALMGTITGSGVANVVTT
GQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALI
PALLYFGSVFWMVHLEAKRAGLKGLPKDECPSAMAAVKERWYLLIPLVVLVWLLFSGRTP
MFAGTIGLALTAIVILGSAIILKVSNFALRIAFWIALGLLCAGFFQLGIGVIFGVIAALV
AVCWFIKGGRDTLVICLHALVEGARHAVPVGIACALVGVIIGVVSLTGVASTFAGYILAV
GENNLFLSLLLTMLTCLVLGMGIPTIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIM
ADLTPPVALACFAAAPIAKERGLKISMWAIRIAIAGFIVPFMAVYNPALMMQGGDWGATL
YMLFKAAFAVGLWGAVFTGYLQRPMALWEKVLAFAAAASMVLAMPISDEIGFALGALFLI
QHIWRARRAEPATA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory