Comparing GFF851 FitnessBrowser__psRCH2:GFF851 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
70% identity, 100% coverage: 1:296/296 of query aligns to 1:296/296 of P68183
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
26% identity, 72% coverage: 84:296/296 of query aligns to 76:281/281 of P94530
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
25% identity, 40% coverage: 152:269/296 of query aligns to 167:287/313 of P94529
>GFF851 FitnessBrowser__psRCH2:GFF851
MAMVQPKSARYRLWATHAALLAFVAAILFPLLMVISISFREGNFATGSLFPENPTLEHWS
LALGIPYTHADGSVTQPPFPVLLWLWNSVKIAFVSSILILLLSTTSAYAFARMRFGGKAP
ILKSMLIFQMFPPVLSLVAIYALFDQLGQHVSWLGVNSHGAVIVASLGGMALHIWTIKGY
FESIDASLEEAAIVDGATTWQAFFHILLPMSVPILAVVFILAFITSVTEYPIASVLLMDV
DKLTLSVGAQQYLYPQNYLWGDFAAAAVLSGLPITAVFLYCQKWIVGGLTAGGVKG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory