SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF907 FitnessBrowser__Phaeo:GFF907 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

7bgnA Crystal structure of mthisn2-amp complex, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
47% identity, 86% coverage: 1:90/105 of query aligns to 115:203/204 of 7bgnA

query
sites
7bgnA
M
 
L
T
 
T
L
 
S
L
 
L
H
 
Y
D
 
A
L
|
L
E
 
E
T
 
S
T
 
T
I
 
I
L
 
S
S
 
Q
R
|
R
K
 
K
G
 
-
A
 
A
D
 
E
P
 
V
D
 
V
S
 
P
S
|
S
W
|
W
T
|
T
A
 
K
K
 
R
L
 
L
L
 
L
A
 
L
K
 
N
G
 
D
P
 
K
E
 
L
K
 
L
C
 
C
A
 
S
E
 
-
K
 
K
F
 
I
G
 
R
E
 
E
E
|
E
A
 
A
I
 
N
E
 
E
A
 
-
I
 
L
I
 
C
E
 
E
A
 
T
V
 
L
K
 
E
D
 
N
N
 
N
-
 
E
-
 
D
K
 
K
T
 
S
G
 
R
L
 
T
A
 
A
S
 
S
E
|
E
G
 
M
A
 
A
D
|
D
V
 
V
L
 
L
Y
|
Y
H
 
H
F
 
A
L
 
M
V
 
V
M
 
L
L
 
L
A
 
A
A
 
L
R
 
K
D
 
D
V
 
V
A
 
K
L
 
V
D
 
E
D
 
E
V
 
V
L
 
L
Q
 
Q
V
 
V
L
 
L
A
 
R
D
 
Q
R
|
R

Sites not aligning to the query:

7bgmA Crystal structure of mthisn2, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
46% identity, 86% coverage: 1:90/105 of query aligns to 125:212/213 of 7bgmA

query
sites
7bgmA
M
 
L
T
 
T
L
 
S
L
 
L
H
 
Y
D
 
A
L
 
L
E
 
E
T
 
S
T
 
T
I
 
I
L
 
S
S
 
Q
R
 
R
K
 
K
G
 
A
A
 
-
D
 
-
P
 
E
D
 
V
S
 
V
S
 
S
W
 
W
T
 
T
A
 
K
K
 
R
L
 
L
L
 
L
A
 
L
K
 
N
G
 
D
P
 
K
E
 
L
K
 
L
C
 
C
A
 
S
E
 
-
K
 
K
F
 
I
G
 
R
E
 
E
E
|
E
A
 
A
I
 
N
E
 
E
A
 
-
I
 
L
I
 
C
E
 
E
A
 
T
V
 
L
K
 
E
D
 
N
N
 
N
-
 
E
-
 
D
K
 
K
T
 
S
G
 
R
L
 
T
A
 
A
S
 
S
E
|
E
G
 
M
A
 
A
D
|
D
V
 
V
L
 
L
Y
 
Y
H
 
H
F
 
A
L
 
M
V
 
V
M
 
L
L
 
L
A
 
A
A
 
L
R
 
K
D
 
D
V
 
V
A
 
K
L
 
V
D
 
E
D
 
E
V
 
V
L
 
L
Q
 
Q
V
 
V
L
 
L
A
 
R
D
 
Q
R
 
R

Sites not aligning to the query:

6j2lA Crystal structure of bi-functional enzyme (see paper)
41% identity, 63% coverage: 3:68/105 of query aligns to 113:178/200 of 6j2lA

query
sites
6j2lA
L
 
F
L
 
L
H
 
Y
D
 
Q
L
 
L
E
 
E
T
 
Q
T
 
L
I
 
L
L
 
A
S
 
E
R
 
R
K
 
K
G
 
Y
A
 
A
D
 
D
P
 
P
D
 
E
S
 
T
S
 
S
W
 
Y
T
 
T
A
 
A
K
 
K
L
 
L
L
 
Y
A
 
A
K
 
S
G
 
G
P
 
T
E
 
K
K
 
R
C
 
I
A
 
A
E
 
Q
K
 
K
F
 
V
G
 
G
E
 
E
E
|
E
A
 
G
I
 
V
E
 
E
A
 
T
I
 
A
I
 
L
E
 
A
A
 
A
V
 
T
K
 
V
D
 
H
N
 
D
K
 
R
T
 
F
G
 
E
L
 
L
A
 
T
S
 
N
E
|
E
G
 
A
A
 
S
D
|
D
V
 
L
L
 
M
Y
 
Y
H
 
H

Sites not aligning to the query:

6j2lB Crystal structure of bi-functional enzyme (see paper)
33% identity, 63% coverage: 3:68/105 of query aligns to 106:163/185 of 6j2lB

query
sites
6j2lB
L
 
F
L
 
L
H
 
Y
D
 
Q
L
 
L
E
 
E
T
 
Q
T
 
L
I
 
L
L
 
A
S
 
E
R
 
R
K
 
K
G
 
Y
A
 
A
D
 
D
P
 
-
D
 
-
S
 
-
S
 
-
W
 
-
T
 
-
A
 
-
K
 
-
L
 
L
L
 
Y
A
 
A
K
 
S
G
 
G
P
 
T
E
 
K
K
 
R
C
 
I
A
 
A
E
 
Q
K
 
K
F
 
V
G
 
G
E
 
E
E
|
E
A
 
G
I
 
V
E
|
E
A
 
T
I
 
A
I
 
L
E
 
A
A
 
A
V
 
T
K
 
V
D
 
H
N
 
D
K
 
R
T
 
F
G
 
E
L
 
L
A
 
T
S
 
N
E
|
E
G
 
A
A
 
S
D
|
D
V
 
L
L
 
M
Y
 
Y
H
 
H

Sites not aligning to the query:

Query Sequence

>GFF907 FitnessBrowser__Phaeo:GFF907
MTLLHDLETTILSRKGADPDSSWTAKLLAKGPEKCAEKFGEEAIEAIIEAVKDNKTGLAS
EGADVLYHFLVMLAARDVALDDVLQVLADRQGLSGIAEKAARPKG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory