Comparing Ga0059261_0265 FitnessBrowser__Korea:Ga0059261_0265 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 10 hits to proteins with known functional sites (download)
Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; SCOT; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; Succinate-coenzyme A transferase; Succinyl-CoA:3-oxoacid CoA transferase; EC 2.8.3.5 from Sus scrofa (Pig) (see 3 papers)
55% identity, 98% coverage: 3:233/235 of query aligns to 41:288/520 of Q29551
Sites not aligning to the query:
1o9lA Succinate:coenzyme-a transferase (pig heart)
56% identity, 97% coverage: 3:230/235 of query aligns to 2:246/468 of 1o9lA
3k6mC Dynamic domains of succinyl-coa:3-ketoacid-coenzyme a transferase from pig heart. (see paper)
56% identity, 97% coverage: 3:230/235 of query aligns to 2:246/466 of 3k6mC
Sites not aligning to the query:
3oxoE Succinyl-coa:3-ketoacid coa transferase from pig heart covalently bound to coa (see paper)
56% identity, 97% coverage: 3:230/235 of query aligns to 2:246/462 of 3oxoE
Sites not aligning to the query:
8i3yD Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
49% identity, 92% coverage: 16:231/235 of query aligns to 15:249/471 of 8i3yD
8i3yA Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
48% identity, 92% coverage: 16:232/235 of query aligns to 15:249/459 of 8i3yA
Sites not aligning to the query:
8i40A Crystal structure of asct from trypanosoma brucei in complex with coa.
49% identity, 93% coverage: 16:233/235 of query aligns to 15:251/467 of 8i40A
Sites not aligning to the query:
1k6dB Crystal structure of acetate coa-transferase alpha subunit (see paper)
47% identity, 86% coverage: 14:216/235 of query aligns to 13:215/219 of 1k6dB
9cq2A Ctfab e46d active site mutant hydrolase (see paper)
46% identity, 86% coverage: 15:215/235 of query aligns to 12:212/213 of 9cq2A
2ahvA Crystal structure of acyl-coa transferase from e. Coli o157:h7 (ydif)- thioester complex with coa- 1 (see paper)
25% identity, 93% coverage: 7:224/235 of query aligns to 14:266/512 of 2ahvA
Sites not aligning to the query:
>Ga0059261_0265 FitnessBrowser__Korea:Ga0059261_0265
MKKLYPSAEAALEGLLHDGITICAGGFGLCGIPERLIDAIQASGVRDMTIASNNAGIDNE
GLGKLLRSRQVRKMISSYVGENKEFERQYLAGELEVEFCPQGTLAERCRAGGAGIPGFYT
KTGVGTKVAEGKETKVFDGQEYILERGIRADLAIIKGWKADEAGNLIFRKTARNFNQPMA
TAANICVAEVEEVVPVGSLDPDAIHLPGIYVKRMIVGAPYDKKIEFRTTRARETA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory