Comparing Ga0059261_0529 FitnessBrowser__Korea:Ga0059261_0529 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
1b4uB Protocatechuate 4,5-dioxygenase (ligab) in complex with protocatechuate (pca) (see paper)
68% identity, 95% coverage: 2:283/297 of query aligns to 1:284/298 of 1b4uB
3wr9A Crystal structure of the anaerobic desb-gallate complex (see paper)
42% identity, 95% coverage: 2:283/297 of query aligns to 1:279/416 of 3wr9A
Sites not aligning to the query:
3wkuA Crystal structure of the anaerobic desb-gallate complex (see paper)
42% identity, 95% coverage: 2:283/297 of query aligns to 1:274/407 of 3wkuA
Sites not aligning to the query:
P0ABR9 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase; 3-carboxyethylcatechol 2,3-dioxygenase; EC 1.13.11.16 from Escherichia coli (strain K12) (see paper)
32% identity, 71% coverage: 11:222/297 of query aligns to 9:204/314 of P0ABR9
>Ga0059261_0529 FitnessBrowser__Korea:Ga0059261_0529
MARITAGVASSHVPLLGVAHDLGKDRDDYFGPIFAGYDWTREWEKAEKPDVVVLVYNDHA
SAFDMKIIPTFAIGCGERYAPADEGWGPRKVPDVHGHPDLAWHIAQSLILDEFDMTIINE
MDVDHGLTVPLSMMFGHVPEWPCKVIPLAVNVVTYPPPSGNRCWALGEAIARAVASFPEE
LNVQVWGTGGMSHQLQGPRAGLINREWDNNFLDGLVGASEHLRHVPHIEYLRETGSEGIE
MVMWLIMRGALGKRTAMLHRHYHVPCSNTAIGHLVLRPDNGEGLDMTGSGAAPLAAE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory