SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ga0059261_0549 FitnessBrowser__Korea:Ga0059261_0549 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
45% identity, 78% coverage: 46:257/271 of query aligns to 21:240/240 of 4qhzC

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Query Sequence

>Ga0059261_0549 FitnessBrowser__Korea:Ga0059261_0549
MTRMRKAGCLMAAWIAVAGASAQEKPGFRDTPMLPDGKWRVHDADRPAPVVVTPATLPGG
APSDAIVLSPDAWQGQLAPWTVAGGVMTVPPRPAGGGDNNLVSRQSFGDVQLHLEFRSPN
PPKDTSQDRGNSGVWFMQRYEVQILDGYRNPTYADGTVGAAYGWKPPLVNAARKPGEWQS
YDIVFERPRFAADGKLLRPAYVTAFLNGVLVQNRQALLGTTVWRKVAAYQAHPDAAPLQL
QDHGSPVSFRNIWVRPLPEAAVDHDLPGEAK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory