SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ga0059261_1024 FitnessBrowser__Korea:Ga0059261_1024 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P39841 Putative mannose-6-phosphate isomerase YvyI; Phosphohexomutase; Phosphomannose isomerase; PMI; EC 5.3.1.8 from Bacillus subtilis (strain 168)
39% identity, 64% coverage: 36:211/274 of query aligns to 70:253/316 of P39841

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P39841
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1qwrA Crystal structure analysis of the mannose 6-phosphate isomerase from bacillus subtilis
39% identity, 64% coverage: 36:211/274 of query aligns to 69:252/315 of 1qwrA

query
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1qwrA
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Query Sequence

>Ga0059261_1024 FitnessBrowser__Korea:Ga0059261_1024
MSATLLAPHRVEKPWGRHSLWPGFADPAPDGEPVGEIWFQSPGDSAPELLIKYLFTSEKL
SVQVHPDDTQARARGLPRGKDECWVILAAEPGATIALGTHEPVDDTTLRAAALDGSIETL
LDWKPVKAGDFIYAPSRTIHAIGAGITLIEIQQNSETTYRLYDYGRPRDLHLEDGVAVAD
AVPFVDAPMPGEVEPGRTILVEGPKFVVERWPGGDRALRMPDGVTGWLVPVRGDGEIDGV
AWKAGECLTLTGNAVLTASPDSDLLFAYPGRKRL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory