Comparing Ga0059261_1647 Ga0059261_1647 PTS system, N-acetylglucosamine-specific IIBC component to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P09323 PTS system N-acetylglucosamine-specific EIICBA component; EIICBA-Nag; EII-Nag; EC 2.7.1.193 from Escherichia coli (strain K12) (see paper)
47% identity, 86% coverage: 3:482/560 of query aligns to 2:469/648 of P09323
Sites not aligning to the query:
P69786 PTS system glucose-specific EIICB component; EIICB-Glc; EII-Glc; EC 2.7.1.199 from Escherichia coli (strain K12) (see 5 papers)
42% identity, 85% coverage: 2:475/560 of query aligns to 3:470/477 of P69786
6bvgA Crystal structure of bcmalt t280c-e54c crosslinked by divalent mercury (see paper)
31% identity, 68% coverage: 9:387/560 of query aligns to 6:442/447 of 6bvgA
1o2fB Complex of enzyme iiaglc and iibglc phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
44% identity, 13% coverage: 404:475/560 of query aligns to 1:71/77 of 1o2fB
>Ga0059261_1647 Ga0059261_1647 PTS system, N-acetylglucosamine-specific IIBC component
MRKILETLQPLGRALMLPIAVLPVAGLLLRIGQPDLLDIAFVSAAGTAIFGNLGILFAIG
VAVGFARDGNGAAALAGVTCYLVSTTGAQTFLIAPPEVVAGLPDAAAKVVAQAWATGQID
RLEVPIGIISGLIGGKFYNRFATIALPEYLAFFGGRRFVPIAAGIAGLLLAGVLGYGYAH
ISSALDAASHAVVESGGAGMFVYGVLNRLLLVTGLHHLLNNVAWFLVGDFGGATGDLGRF
FAGDPNAGAFMSGFFPVMMFGLPAACLAMYHEARPERRKAVGGMLFSLAFTSFLTGVTEP
IEFTFMFLAPVLYAIHAVLTGVAMTLMDMLGIKLGFGFSAGLFDYVLNFKLSTRPWMLLP
VGAAYAVIYYTLFRFFIRKLDLATPGREKGEAVAAAGETAAGNERGAAFVKALGGAANLT
SVDACTTRLRLIVADQSAVDDAALNALGARGIIRPSANATQVVLGPIADLVAEEIRGAIG
GGAAAVSAAPAQALADEAVTLPAAILAALGGEANIRALQALHGRFRVEVVDAARTDEASL
LAAANGAVSPQPGVYHILHD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory