SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing Ga0059261_2122 FitnessBrowser__Korea:Ga0059261_2122 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2gtvX Nmr structure of monomeric chorismate mutase from methanococcus jannaschii (see paper)
30% identity, 93% coverage: 4:93/97 of query aligns to 3:96/104 of 2gtvX

query
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2gtvX

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binding 8-hydroxy-2-oxa-bicyclo[3.3.1]non-6-ene-3,5-dicarboxylic acid: R9 (= R10), R34 (= R27), V41 (= V34), K45 (= K38), D54 (= D47), R57 (= R50), E58 (= E51), N90 (≠ H87), Q94 (= Q91)

Query Sequence

>Ga0059261_2122 FitnessBrowser__Korea:Ga0059261_2122
MSDETLQRYRQSIDRIDAALVFLLAERFQITQAVGRHKAETGLPPADPGREDRQIARLRE
LAAQADLDPEFSEKFLRFIIDEVIRHHAQMQEQSDAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory