Comparing Ga0059261_2416 FitnessBrowser__Korea:Ga0059261_2416 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 9 hits to proteins with known functional sites (download)
P48636 Cytokinin riboside 5'-monophosphate phosphoribohydrolase; AMP nucleosidase; PaLOG; EC 3.2.2.n1; EC 3.2.2.4 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
48% identity, 94% coverage: 3:186/196 of query aligns to 2:185/195 of P48636
5zbkA Crystal structure of type-i log from pseudomonas aeruginosa pao1 in complex with amp (see paper)
48% identity, 93% coverage: 3:184/196 of query aligns to 1:182/182 of 5zbkA
5zblD Crystal structure of type-i log from corynebacterium glutamicum in complex with amp (see paper)
41% identity, 93% coverage: 3:184/196 of query aligns to 1:181/181 of 5zblD
Q5ZC82 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; Protein LONELY GUY; EC 3.2.2.n1 from Oryza sativa subsp. japonica (Rice) (see paper)
41% identity, 97% coverage: 2:191/196 of query aligns to 33:222/242 of Q5ZC82
O05306 Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Protein LONELY GUY homolog; LOG homolog; EC 3.2.2.n1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
40% identity, 89% coverage: 7:180/196 of query aligns to 13:185/187 of O05306
7w2iA Crystal structure of log (rv1205) from mycobacterium tuberculosis (see paper)
40% identity, 89% coverage: 7:180/196 of query aligns to 9:181/183 of 7w2iA
3sbxA Crystal structure of a putative uncharacterized protein from mycobacterium marinum bound to adenosine 5'-monophosphate amp (see paper)
40% identity, 89% coverage: 7:180/196 of query aligns to 4:176/177 of 3sbxA
5ajuA Crystal structure of ligand-free phosphoribohydroxylase lonely guy from claviceps purpurea in complex with phosphoribose (see paper)
32% identity, 90% coverage: 6:182/196 of query aligns to 4:203/217 of 5ajuA
6gfmA Crystal structure of the escherichia coli nucleosidase ppnn (pppgpp- form) (see paper)
29% identity, 47% coverage: 25:117/196 of query aligns to 169:267/440 of 6gfmA
Sites not aligning to the query:
>Ga0059261_2416 FitnessBrowser__Korea:Ga0059261_2416
MTSLNRLAIYCGSATPSDPVYVENARFVGRTLAERGIGVVYGGGRLGLMGAVADAALEAG
GEVIGVIPQALVDAEVAHRGCTELHIVRTMHERKQAFTDISDGFVTLPGGTGTMDELWEA
MSWAQIGYHAKPVGLLNTANFYDGLIAFVKTMGEVGFLRPQHQGLLIIDDQLDGLLEKMA
AHVPATTIGQIGSKDL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory