SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing Ga0059261_2631 FitnessBrowser__Korea:Ga0059261_2631 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

7qh2C Cryo-em structure of ldh-etfab complex from acetobacterium woodii (see paper)
30% identity, 92% coverage: 12:465/493 of query aligns to 7:463/467 of 7qh2C

query
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7qh2C

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binding flavin-adenine dinucleotide: V73 (≠ P78), G75 (= G80), S76 (≠ A81), G77 (= G82), T78 (= T83), G79 (≠ S84), L80 (= L85), A83 (≠ G88), C84 (≠ A89), P137 (= P142), G138 (≠ S143), E139 (≠ S144), A142 (= A147), T143 (= T149), G146 (= G152), N147 (= N153), S149 (≠ A155), T150 (≠ E156), A152 (≠ S158), G153 (= G159), E203 (= E208), G204 (= G209), I209 (≠ V214), E422 (= E424), H423 (= H425)
binding fe (iii) ion: H377 (= H380), H384 (= H387), E422 (= E424)

P9WIT1 Uncharacterized FAD-linked oxidoreductase Rv2280; EC 1.-.-.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
35% identity, 86% coverage: 43:466/493 of query aligns to 33:456/459 of P9WIT1

query
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P9WIT1

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K354 (≠ E359) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)

8jdvA Crystal structure of mldhd in complex with 2-ketohexanoic acid (see paper)
31% identity, 92% coverage: 14:466/493 of query aligns to 4:454/454 of 8jdvA

query
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I

A

N

I

V

V

F

G

H
|
H

A

V

G

G

D

D

G

G

N

N

L

F

H
|
H

P

C

L

I

I

L

L

L

Y

V

D

D

A

P

N

D

Q

D

P

A

G

E

Q

E

L

Q

E

R

R

R

A

V

E

K

A

A

F

F

G

A

A

E

D

N

I

L

L

G

K

R

L

R

C

A

V

L

E

A

V

L

G

G

V

T

L

C

T

T

G

G

E
|
E

H
|
H

G

G

V

I

G

G

V

L

E

G

K

K

R

R

D

Q

L

L

M

L

H

Q

T

E

M

E

F

V

S

G

E

P

T

V

D

G

L

V

A

E

Q

T

Q

M

Q

R

R

Q

V

L

K

K

C

N

A

T

F

L

D

D

P

P

E

R

L

G

L

L

L

M

N
|
N

P

P

G

G

K

K

M

V

F

L

binding 2-Ketohexanoic acid: V75 (≠ L85), R317 (= R331), W321 (≠ F335), H368 (= H380), H375 (= H387), H413 (= H425)
binding flavin-adenine dinucleotide: P68 (= P78), G70 (= G80), T71 (≠ A81), G72 (= G82), T73 (= T83), G74 (≠ S84), G78 (= G88), V79 (≠ A89), L90 (≠ M100), P132 (= P142), G133 (≠ S143), A134 (≠ S144), G140 (= G152), M141 (≠ N153), A143 (= A155), T144 (≠ E156), A146 (≠ S158), S147 (≠ G159), E200 (= E208), G201 (= G209), I206 (≠ V214), W321 (≠ F335), Y322 (≠ P336), E412 (= E424), H413 (= H425), N449 (= N461)
binding manganese (ii) ion: H368 (= H380), H375 (= H387), E412 (= E424)

8jdeA Crystal structure of mldhd in complex with d-lactate (see paper)
31% identity, 92% coverage: 14:466/493 of query aligns to 4:455/455 of 8jdeA

query
sites
8jdeA

E

D

I

F

V

V

A

E

A

A

M

L

R

K

A

A

I

V

V

V

P

G

G

S

E

P

G

H

V

V

I

S

D

T

A

A

L

S

E

A

A

V

L

R

R

E

P

Q

Y

H

E

G

S

H

D

D

A

E

L

S

T

M

A

H

Y

R

A

C

Q

Q

V

P

P

P

L

D

L

A

V

V

L

W

P

P

E

Q

T

N

V

V

E

D

Q

Q

V

V

A

S

A

R

V

V

L

A

R

S

W

L

C

C

H

Y

E

N

N

Q

R

G

V

V

K

P

V

I

P
|
P

R

F

G
|
G

A
x
T

G
|
G

T
|
T

S
x
G

L

V

S

E

G

G

G
|
G

A
x
V

L

C

P

A

L

V

A

Q

D

G

G

G

V

V

L

C

L

I

G

N

M
x
L

A

T

R

H

F

M

N

D

R

Q

V

I

L

T

D

E

I

L

D

N

Y

T

A

E

D

D

R

F

V

S

A

V

V

V

Q

E

P

P

G

G

V

V

T

T

N

R

L

K

A

A

I

L

T

N

R

T

A

H

V

L

E

R

D

D

A

S

G

G

F

L

Y

W

Y

F

A

P

P

V

D

D

P
|
P

S
x
G

S
x
A

Q

D

I

-

A

-

C

A

T

S

I

L

G

C

G
|
G

N
x
M

V

A

A
|
A

E
x
T

N

G

S
x
A

G
x
S

G

G

V

T

H

N

C

A

L

V

K

R

Y

Y

G

G

L

T

T

M

T

R

N

D

N

N

V

V

L

I

G

N

V

L

E

E

L

V

V

V

T

L

I

P

E

D

G

G

E

R

V

L

R

H

L

T

G

A

G

G

R

R

G

G

L

R

E

H

-

Y

-

R

-

K

-

S

P

A

A

A

G

G

L

Y

D

N

L

L

L

T

G

G

V

L

I

F

V

V

G

G

S

S

E
|
E

G
|
G

L

T

L

L

G

G

V

I

V
x
I

T

T

E

S

V

T

T

T

V

L

R

R

I

L

L

H

P

P

R

A

P

P

E

E

T

A

A

T

K

V

A

A

L

A

L

T

I

C

G

A

F

F

P

P

D

S

V

V

E

Q

S

A

A

A

G

V

V

D

C

S

V

T

A

V

Q

Q

I

I

I

L

A

Q

A

A

G

A

I

V

I

P

P

V

A

A

G

R

M

I

E

E

M

F

M

L

D

D

K

D

P

V

A

M

I

M

N

D

A

A

A

C

E

N

A

R

F

H

V

S

N

K

A

L

G

N

Y

C

P

P

L

-

D

-

V

V

E

A

A

P

L

T

L

L

I

F

V

L

E

E

L

F

D

H

G

G

P

S

G

Q

A

Q

E

T

C

L

G

A

H

E

L

Q

T

L

G

Q

E

R

V

T

E

E

A

A

I

I

A

T

R

Q

A

D

H

N

G

G

A

G

V

S

S

H

V

F

Q

S

A

W

S

A

R

-

D

-

A

A

E

E

R

K

A

N

L

E

F

L

W

W

A

A

G

A

R
|
R

K

H

A

N

A

A

F
x
W

P

Y

A

A

G

L

R

A

I

L

S

S

P

P

-

G

-

S

D

K

Y

A

Y

Y

C

S

M

T

D

D

G

V

T

C

I

V

P

P

R

I

R

S

R

R

L

L

P

P

E

E

V

I

L

L

T

V

R

E

M

T

K

K

A

E

L

E

S

I

E

K

Q

A

Y

S

G

K

L

L

G

T

V

G

I

A

N

I

V

V

F

G

H
|
H

A

V

G

G

D

D

G

G

N

N

L

F

H
|
H

P

C

L

I

I

L

L

L

Y

V

D

D

A

P

N

D

Q

D

P

A

G

E

Q

E

L

Q

E

R

R

R

A

V

E

K

A

A

F

F

G

A

A

E

D

N

I

L

L

G

K

R

L

R

C

A

V

L

E

A

V

L

G

G

V

T

L

C

T

T

G

G

E
|
E

H
|
H

G

G

V

I

G

G

V

L

E

G

K

K

R

R

D

Q

L

L

M

L

H

Q

T

E

M

E

F

V

S

G

E

P

T

V

D

G

L

V

A

E

Q

T

Q

M

Q

R

R

Q

V

L

K

K

C

N

A

T

F

L

D

D

P

P

E

R

L

G

L

L

L

M

N
|
N

P

P

G

G

K

K

M

V

F

L

binding flavin-adenine dinucleotide: P68 (= P78), G70 (= G80), T71 (≠ A81), G72 (= G82), T73 (= T83), G74 (≠ S84), G78 (= G88), V79 (≠ A89), L90 (≠ M100), P132 (= P142), G133 (≠ S143), A134 (≠ S144), G140 (= G152), M141 (≠ N153), A143 (= A155), T144 (≠ E156), A146 (≠ S158), S147 (≠ G159), E200 (= E208), G201 (= G209), I206 (≠ V214), W322 (≠ F335), E413 (= E424), H414 (= H425), N450 (= N461)
binding lactic acid: R318 (= R331), H369 (= H380), H376 (= H387), H414 (= H425)
binding manganese (ii) ion: H369 (= H380), H376 (= H387), E413 (= E424)

8jdsA Crystal structure of mldhd in complex with pyruvate (see paper)
30% identity, 92% coverage: 14:466/493 of query aligns to 4:456/456 of 8jdsA

query
sites
8jdsA

E

D

I

F

V

V

A

E

A

A

M

L

R

K

A

A

I

V

V

V

P

G

G

S

E

P

G

H

V

V

I

S

D

T

A

A

L

S

E

A

A

V

L

R

R

E

P

Q

Y

H

E

G

S

H

D

D

A
x
E

L

S

T

M

A

H

Y

R

A

C

Q

Q

V

P

P

P

L

D

L

A

V

V

L

W

P

P

E

Q

T

N

V

V

E

D

Q

Q

V

V

A

S

A

R

V

V

L

A

R

S

W

L

C

C

H

Y

E

N

N

Q

R

G

V

V

K

P

V

I

P
|
P

R

F

G
|
G

A
x
T

G
|
G

T
|
T

S
x
G

L

V

S

E

G

G

G
|
G

A
x
V

L

C

P

A

L

V

A

Q

D

G

G

G

V

V

L

C

L

I

G

N

M
x
L

A

T

R

H

F

M

N

D

R

Q

V

I

L

T

D

E

I

L

D

N

Y

T

A

E

D

D

R

F

V

S

A

V

V

V

Q

E

P

P

G

G

V

V

T

T

N

R

L

K

A

A

I

L

T

N

R

T

A

H

V

L

E

R

D

D

A

S

G

G

F

L

Y

W

Y

F

A

P

P

V

D

D

P
|
P

S
x
G

S
x
A

Q

D

I

-

A

-

C

A

T

S

I

L

G

C

G
|
G

N
x
M

V

A

A
|
A

E
x
T

N

G

S
x
A

G
x
S

G

G

V

T

H

N

C

A

L

V

K

R

Y

Y

G

G

L

T

T

M

T

R

N

D

N

N

V

V

L

I

G

N

V

L

E

E

L

V

V

V

T

L

I

P

E

D

G

G

E

R

V

L

R

H

L

T

G

A

G

G

R

R

G

G

L

R

E

H

-

Y

-

R

-

K

-

S

P

A

A

A

G

G

L

Y

D

N

L

L

L

T

G

G

V

L

I

F

V

V

G

G

S

S

E
|
E

G
|
G

L

T

L

L

G

G

V

I

V
x
I

T

T

E

S

V

T

T

T

V

L

R

R

I

L

L

H

P

P

R

A

P

P

E

E

T

A

A

T

K

V

A

A

L

A

L

T

I

C

G

A

F

F

P

P

D

S

V

V

E

Q

S

A

A

A

G

V

V

D

C

S

V

T

A

V

Q

Q

I

I

I

L

A

Q

A

A

G

A

I

V

I

P

P

V

A

A

G

R

M

I

E

E

M

F

M

L

D

D

K

D

P

V

A

M

I

M

N

D

A

A

A

C

E

N

A

R

F

H

V

S

N

K

A

L

G

N

Y

C

P

P

L

-

D

-

V

V

E

A

A

P

L

T

L

L

I

F

V

L

E

E

L

F

D

H

G

G

P

S

G

Q

A

Q

E

T

C

L

G

A

H

E

L

Q

T

L

G

Q

E

R

V

T

E

E

A

A

I

I

A

T

R

Q

A

D

H

N

G

G

A

G

V

S

S

H

V

F

Q

S

A

W

S

A

R

A

D

E

D

-

A

-

E

K

R

R

A

N

L

E

F

L

W

W

A

A

G

A

R
|
R

K

H

A

N

A

A

F
x
W

P

Y

A

A

G

L

R

A

I

L

S

S

P

P

-

G

-

S

D

K

Y

A

Y

Y

C

S

M

T

D

D

G

V

T

C

I

V

P

P

R

I

R

S

R

R

L

L

P

P

E

E

V

I

L

L

T

V

R

E

M

T

K

K

A

E

L

E

S

I

E

K

Q

A

Y

S

G

K

L

L

G

T

V

G

I

A

N

I

V

V

F

G

H
|
H

A

V

G

G

D

D

G

G

N

N

L

F

H
|
H

P

C

L

I

I

L

L

L

Y

V

D

D

A

P

N

D

Q

D

P

A

G

E

Q

E

L

Q

E

R

R

R

A

V

E

K

A

A

F

F

G

A

A

E

D

N

I

L

L

G

K

R

L

R

C

A

V

L

E

A

V

L

G

G

V

T

L

C

T

T

G

G

E
|
E

H
|
H

G

G

V

I

G

G

V

L

E

G

K

K

R

R

D

Q

L

L

M

L

H

Q

T

E

M

E

F

V

S

G

E

P

T

V

D

G

L

V

A

E

Q

T

Q

M

Q

R

R

Q

V

L

K

K

C

N

A

T

F

L

D

D

P

P

E

R

L

G

L

L

L

M

N
|
N

P

P

G

G

K

K

M

V

F

L

binding flavin-adenine dinucleotide: E32 (≠ A42), P68 (= P78), G70 (= G80), T71 (≠ A81), G72 (= G82), T73 (= T83), G74 (≠ S84), G78 (= G88), V79 (≠ A89), L90 (≠ M100), P132 (= P142), G133 (≠ S143), A134 (≠ S144), G140 (= G152), M141 (≠ N153), A143 (= A155), T144 (≠ E156), A146 (≠ S158), S147 (≠ G159), E200 (= E208), G201 (= G209), I206 (≠ V214), W323 (≠ F335), E414 (= E424), H415 (= H425), N451 (= N461)
binding manganese (ii) ion: H370 (= H380), H377 (= H387), E414 (= E424)
binding pyruvic acid: R319 (= R331), H370 (= H380), H377 (= H387), H415 (= H425)

8jdtA Crystal structure of mldhd in complex with 2-ketobutanoic acid (see paper)
30% identity, 92% coverage: 14:466/493 of query aligns to 4:455/455 of 8jdtA

query
sites
8jdtA

E

D

I

F

V

V

A

E

A

A

M

L

R

K

A

A

I

V

V

V

P

G

G

S

E

P

G

H

V

V

I

S

D

T

A

A

L

S

E

A

A

V

L

R

R

E

P

Q

Y

H

E

G

S

H

D

D

A

E

L

S

T

M

A

H

Y

R

A

C

Q

Q

V

P

P

P

L

D

L

A

V

V

L

W

P

P

E

Q

T

N

V

V

E

D

Q

Q

V

V

A

S

A

R

V

V

L

A

R

S

W

L

C

C

H

Y

E

N

N

Q

R

G

V

V

K

P

V

I

P
|
P

R

F

G
|
G

A
x
T

G
|
G

T
|
T

S
x
G

L

V

S

E

G

G

G
|
G

A
x
V

L

C

P

A

L

V

A

Q

D

G

G

G

V

V

L

C

L

I

G

N

M
x
L

A

T

R

H

F

M

N

D

R

Q

V

I

L

T

D

E

I

L

D

N

Y

T

A

E

D

D

R

F

V

S

A

V

V

V

Q

E

P

P

G

G

V

V

T

T

N

R

L

K

A

A

I

L

T

N

R

T

A

H

V

L

E

R

D

D

A

S

G

G

F

L

Y

W

Y

F

A

P

P

V

D

D

P
|
P

S
x
G

S
x
A

Q

D

I

-

A

-

C

A

T

S

I

L

G

C

G
|
G

N
x
M

V

A

A
|
A

E
x
T

N

G

S
x
A

G
x
S

G

G

V

T

H

N

C

A

L

V

K

R

Y

Y

G

G

L

T

T

M

T

R

N

D

N

N

V

V

L

I

G

N

V

L

E

E

L

V

V

V

T

L

I

P

E

D

G

G

E

R

V

L

R

H

L

T

G

A

G

G

R

R

G

G

L

R

E

H

-

Y

-

R

-

K

-

S

P

A

A

A

G

G

L

Y

D

N

L

L

L

T

G

G

V

L

I

F

V

V

G

G

S

S

E
|
E

G
|
G

L

T

L

L

G

G

V

I

V
x
I

T

T

E

S

V

T

T

T

V

L

R

R

I

L

L

H

P

P

R

A

P

P

E

E

T

A

A

T

K

V

A

A

L

A

L

T

I

C

G

A

F

F

P

P

D

S

V

V

E

Q

S

A

A

A

G

V

V

D

C

S

V

T

A

V

Q

Q

I

I

I

L

A

Q

A

A

G

A

I

V

I

P

P

V

A

A

G

R

M

I

E

E

M

F

M

L

D

D

K

D

P

V

A

M

I

M

N

D

A

A

A

C

E

N

A

R

F

H

V

S

N

K

A

L

G

N

Y

C

P

P

L

-

D

-

V

V

E

A

A

P

L

T

L

L

I

F

V

L

E

E

L

F

D

H

G

G

P

S

G

Q

A

Q

E

T

C

L

G

A

H

E

L

Q

T

L

G

Q

E

R

V

T

E

E

A

A

I

I

A

T

R

Q

A

D

H

N

G

G

A

G

V

S

S

H

V

F

Q

S

A

W

S

A

R

E

D

-

A

-

E

K

R

R

A

N

L

E

F

L

W

W

A

A

G

A

R
|
R

K

H

A

N

A

A

F
x
W

P

Y

A

A

G

L

R

A

I

L

S

S

P

P

-

G

-

S

D

K

Y

A

Y

Y

C

S

M

T

D

D

G

V

T

C

I

V

P

P

R

I

R

S

R

R

L

L

P

P

E

E

V

I

L

L

T

V

R

E

M

T

K

K

A

E

L

E

S

I

E

K

Q

A

Y

S

G

K

L

L

G

T

V

G

I

A

N

I

V

V

F

G

H
|
H

A

V

G

G

D

D

G

G

N

N

L

F

H
|
H

P

C

L

I

I

L

L

L

Y

V

D

D

A

P

N

D

Q

D

P

A

G

E

Q

E

L

Q

E

R

R

R

A

V

E

K

A

A

F

F

G

A

A

E

D

N

I

L

L

G

K

R

L

R

C

A

V

L

E

A

V

L

G

G

V

T

L

C

T

T

G

G

E
|
E

H
|
H

G

G

V

I

G

G

V

L

E

G

K

K

R

R

D

Q

L

L

M

L

H

Q

T

E

M

E

F

V

S

G

E

P

T

V

D

G

L

V

A

E

Q

T

Q

M

Q

R

R

Q

V

L

K

K

C

N

A

T

F

L

D

D

P

P

E

R

L

G

L

L

L

M

N
|
N

P

P

G

G

K

K

M

V

F

L

binding 2-ketobutyric acid: R318 (= R331), H369 (= H380), H376 (= H387), H414 (= H425)
binding flavin-adenine dinucleotide: P68 (= P78), G70 (= G80), T71 (≠ A81), G72 (= G82), T73 (= T83), G74 (≠ S84), G78 (= G88), V79 (≠ A89), L90 (≠ M100), P132 (= P142), G133 (≠ S143), A134 (≠ S144), G140 (= G152), M141 (≠ N153), A143 (= A155), T144 (≠ E156), A146 (≠ S158), S147 (≠ G159), E200 (= E208), G201 (= G209), I206 (≠ V214), W322 (≠ F335), E413 (= E424), H414 (= H425), N450 (= N461)
binding manganese (ii) ion: H369 (= H380), H376 (= H387), E413 (= E424)

8jduA Crystal structure of mldhd in complex with 2-ketovaleric acid (see paper)
31% identity, 92% coverage: 14:466/493 of query aligns to 4:455/455 of 8jduA

query
sites
8jduA

E

D

I

F

V

V

A

E

A

A

M

L

R

K

A

A

I

V

V

V

P

G

G

S

E

P

G

H

V

V

I

S

D

T

A

A

L

S

E

A

A

V

L

R

R

E

P

Q

Y

H

E

G

S

H

D

D

A

E

L

S

T

M

A

H

Y

R

A

C

Q

Q

V

P

P

P

L

D

L

A

V

V

L

W

P

P

E

Q

T

N

V

V

E

D

Q

Q

V

V

A

S

A

R

V

V

L

A

R

S

W

L

C

C

H

Y

E

N

N

Q

R

G

V

V

K

P

V

I

P
|
P

R

F

G
|
G

A
x
T

G
|
G

T
|
T

S
x
G

L

V

S

E

G

G

G
|
G

A
x
V

L

C

P

A

L

V

A

Q

D

G

G

G

V

V

L

C

L

I

G

N

M
x
L

A

T

R

H

F

M

N

D

R

Q

V

I

L

T

D

E

I

L

D

N

Y

T

A

E

D

D

R

F

V

S

A

V

V

V

Q

E

P

P

G

G

V

V

T

T

N

R

L

K

A

A

I

L

T

N

R

T

A

H

V

L

E

R

D

D

A

S

G

G

F

L

Y

W

Y

F

A

P

P

V

D

D

P
|
P

S
x
G

S
x
A

Q

D

I

-

A

-

C

A

T

S

I

L

G

C

G
|
G

N
x
M

V

A

A
|
A

E
x
T

N

G

S
x
A

G
x
S

G

G

V

T

H

N

C

A

L

V

K

R

Y

Y

G

G

L

T

T

M

T

R

N

D

N

N

V

V

L

I

G

N

V

L

E

E

L

V

V

V

T

L

I

P

E

D

G

G

E

R

V

L

R

H

L

T

G

A

G

G

R

R

G

G

L

R

E

H

-

Y

-

R

-

K

-

S

P

A

A

A

G

G

L

Y

D

N

L

L

L

T

G

G

V

L

I

F

V

V

G

G

S

S

E
|
E

G
|
G

L

T

L

L

G

G

V

I

V
x
I

T

T

E

S

V

T

T

T

V

L

R

R

I

L

L

H

P

P

R

A

P

P

E

E

T

A

A

T

K

V

A

A

L

A

L

T

I

C

G

A

F

F

P

P

D

S

V

V

E

Q

S

A

A

A

G

V

V

D

C

S

V

T

A

V

Q

Q

I

I

I

L

A

Q

A

A

G

A

I

V

I

P

P

V

A

A

G

R

M

I

E

E

M

F

M

L

D

D

K

D

P

V

A

M

I

M

N

D

A

A

A

C

E

N

A

R

F

H

V

S

N

K

A

L

G

N

Y

C

P

P

L

-

D

-

V

V

E

A

A

P

L

T

L

L

I

F

V

L

E

E

L

F

D

H

G

G

P

S

G

Q

A

Q

E

T

C

L

G

A

H

E

L

Q

T

L

G

Q

E

R

V

T

E

E

A

A

I

I

A

T

R

Q

A

N

H

G

G

G

A

S

V

H

S

F

V

S

Q

W

A

A

S

A

R

E

D

-

A

-

E

K

R

R

A

N

L

E

F

L

W

W

A

A

G

A

R
|
R

K

H

A

N

A

A

F
x
W

P

Y

A

A

G

L

R

A

I

L

S

S

P

P

-

G

-

S

D

K

Y

A

Y

Y

C

S

M

T

D

D

G

V

T

C

I

V

P

P

R

I

R

S

R

R

L

L

P

P

E

E

V

I

L

L

T

V

R

E

M

T

K

K

A

E

L

E

S

I

E

K

Q

A

Y

S

G

K

L

L

G

T

V

G

I

A

N

I

V

V

F

G

H
|
H

A

V

G

G

D

D

G

G

N

N

L

F

H
|
H

P

C

L

I

I

L

L

L

Y

V

D

D

A

P

N

D

Q

D

P

A

G

E

Q

E

L

Q

E

R

R

R

A

V

E

K

A

A

F

F

G

A

A

E

D

N

I

L

L

G

K

R

L

R

C

A

V

L

E

A

V

L

G

G

V

T

L

C

T

T

G

G

E
|
E

H
|
H

G

G

V

I

G

G

V

L

E

G

K

K

R

R

D

Q

L

L

M

L

H

Q

T

E

M

E

F

V

S

G

E

P

T

V

D

G

L

V

A

E

Q

T

Q

M

Q

R

R

Q

V

L

K

K

C

N

A

T

F

L

D

D

P

P

E

R

L

G

L

L

L

M

N
|
N

P

P

G

G

K

K

M

V

F

L

binding 2-oxopentanoic acid: R318 (= R331), W322 (≠ F335), H369 (= H380), H376 (= H387), H414 (= H425)
binding flavin-adenine dinucleotide: P68 (= P78), G70 (= G80), T71 (≠ A81), G72 (= G82), T73 (= T83), G74 (≠ S84), G78 (= G88), V79 (≠ A89), L90 (≠ M100), P132 (= P142), G133 (≠ S143), A134 (≠ S144), G140 (= G152), M141 (≠ N153), A143 (= A155), T144 (≠ E156), A146 (≠ S158), S147 (≠ G159), E200 (= E208), G201 (= G209), I206 (≠ V214), W322 (≠ F335), E413 (= E424), N450 (= N461)
binding manganese (ii) ion: H369 (= H380), H376 (= H387), E413 (= E424)

8jdpA Crystal structure of h405a mldhd in complex with d-2-hydroxyisovaleric acid (see paper)
30% identity, 92% coverage: 14:466/493 of query aligns to 4:455/455 of 8jdpA

query
sites
8jdpA

E

D

I

F

V

V

A

E

A

A

M

L

R

K

A

A

I

V

V

V

P

G

G

S

E

P

G

H

V

V

I

S

D

T

A

A

L

S

E

A

A

V

L

R

R

E

P

Q

Y

H

E

G

S

H

D

D

A

E

L

S

T

M

A

H

Y

R

A

C

Q

Q

V

P

P

P

L

D

L

A

V

V

L

W

P

P

E

Q

T

N

V

V

E

D

Q

Q

V

V

A

S

A

R

V

V

L

A

R

S

W

L

C

C

H

Y

E

N

N

Q

R

G

V

V

K

P

V

I

P
|
P

R

F

G
|
G

A
x
T

G
|
G

T
|
T

S
x
G

L

V

S

E

G

G

G
|
G

A
x
V

L

C

P

A

L

V

A

Q

D

G

G

G

V

V

L

C

L

I

G

N

M
x
L

A

T

R

H

F

M

N

D

R

Q

V

I

L

T

D

E

I

L

D

N

Y

T

A

E

D

D

R

F

V

S

A

V

V

V

Q

E

P

P

G

G

V

V

T

T

N

R

L

K

A

A

I

L

T

N

R

T

A

H

V

L

E

R

D

D

A

S

G

G

F

L

Y

W

Y

F

A

P

P

V

D

D

P
|
P

S
x
G

S
x
A

Q

D

I

-

A

-

C

A

T

S

I

L

G

C

G
|
G

N
x
M

V

A

A
|
A

E
x
T

N

G

S
x
A

G
x
S

G

G

V

T

H

N

C

A

L

V

K

R

Y

Y

G

G

L

T

T

M

T

R

N

D

N

N

V

V

L

I

G

N

V

L

E

E

L

V

V

V

T

L

I

P

E

D

G

G

E

R

V

L

R

H

L

T

G

A

G

G

R

R

G

G

L

R

E

H

-

Y

-

R

-

K

-

S

P

A

A

A

G

G

L

Y

D

N

L

L

L

T

G

G

V

L

I

F

V

V

G

G

S

S

E
|
E

G
|
G

L

T

L

L

G

G

V

I

V
x
I

T

T

E

S

V

T

T

T

V

L

R

R

I

L

L

H

P

P

R

A

P

P

E

E

T

A

A

T

K

V

A

A

L

A

L

T

I

C

G

A

F

F

P

P

D

S

V

V

E

Q

S

A

A

A

G

V

V

D

C

S

V

T

A

V

Q

Q

I

I

I

L

A

Q

A

A

G

A

I

V

I

P

P

V

A

A

G

R

M

I

E

E

M

F

M

L

D

D

K

D

P

V

A

M

I

M

N

D

A

A

A

C

E

N

A

R

F

H

V

S

N

K

A

L

G

N

Y

C

P

P

L

-

D

-

V

V

E

A

A

P

L

T

L

L

I

F

V

L

E

E

L

F

D

H

G

G

P

S

G

Q

A

Q

E

T

C

L

G

A

H

E

L

Q

T

L

G

Q

E

R

V

T

E

E

A

A

I

I

A

T

R

Q

A

D

H

N

G

G

A

G

V

S

S

H

V

F

Q

S

A

W

S

A

R

A

D

E

D

-

A

-

E

K

R

R

A

N

L

E

F

L

W

W

A

A

G

A

R
|
R

K

H

A

N

A

A

F

W

P

Y

A

A

G

L

R

A

I

L

S

S

P

P

D

S

Y

K

-

A

Y

Y

C

S

M

T

D

D

G

V

T

C

I

V

P

P

R

I

R

S

R

R

L

L

P

P

E

E

V

I

L

L

T

V

R

E

M

T

K

K

A

E

L

E

S

I

E

K

Q

A

Y

S

G

K

L

L

G

T

V

G

I

A

N

I

V

V

F

G

H
|
H

A

V

G

G

D

D

G

G

N

N

L

F

H

A

P

C

L

I

I

L

L

L

Y

V

D

D

A

P

N

D

Q

D

P

A

G

E

Q

E

L

Q

E

R

R

R

A

V

E

K

A

A

F

F

G

A

A

E

D

N

I

L

L

G

K

R

L

R

C

A

V

L

E

A

V

L

G

G

V

T

L

C

T

T

G

G

E
|
E

H
|
H

G

G

V

I

G

G

V

L

E

G

K

K

R

R

D

Q

L

L

M

L

H

Q

T

E

M

E

F

V

S

G

E

P

T

V

D

G

L

V

A

E

Q

T

Q

M

Q

R

R

Q

V

L

K

K

C

N

A

T

F

L

D

D

P

P

E

R

L

G

L

L

L

M

N
|
N

P

P

G

G

K

K

M

V

F

L

binding flavin-adenine dinucleotide: P68 (= P78), G70 (= G80), T71 (≠ A81), G72 (= G82), T73 (= T83), G74 (≠ S84), G78 (= G88), V79 (≠ A89), L90 (≠ M100), P132 (= P142), G133 (≠ S143), A134 (≠ S144), G140 (= G152), M141 (≠ N153), A143 (= A155), T144 (≠ E156), A146 (≠ S158), S147 (≠ G159), E200 (= E208), G201 (= G209), I206 (≠ V214), H369 (= H380), E413 (= E424), N450 (= N461)
binding deaminohydroxyvaline: R319 (= R331), H414 (= H425)

8jdxA Crystal structure of mldhd in complex with 2-ketoisovaleric acid (see paper)
30% identity, 92% coverage: 14:466/493 of query aligns to 4:455/455 of 8jdxA

query
sites
8jdxA

E

D

I

F

V

V

A

E

A

A

M

L

R

K

A

A

I

V

V

V

P

G

G

S

E

P

G

H

V

V

I

S

D

T

A

A

L

S

E

A

A

V

L

R

R

E

P

Q

Y

H

E

G

S

H

D

D

A
x
E

L

S

T

M

A

H

Y

R

A

C

Q

Q

V

P

P

P

L

D

L

A

V

V

L

W

P

P

E

Q

T

N

V

V

E

D

Q

Q

V

V

A

S

A

R

V

V

L

A

R

S

W

L

C

C

H

Y

E

N

N

Q

R

G

V

V

K

P

V

I

P
|
P

R

F

G
|
G

A
x
T

G
|
G

T
|
T

S
x
G

L

V

S

E

G

G

G
|
G

A
x
V

L

C

P

A

L

V

A

Q

D

G

G

G

V

V

L

C

L

I

G

N

M
x
L

A

T

R

H

F

M

N

D

R

Q

V

I

L

T

D

E

I

L

D

N

Y

T

A

E

D

D

R

F

V

S

A

V

V

V

Q

E

P

P

G

G

V

V

T

T

N

R

L

K

A

A

I

L

T

N

R

T

A

H

V

L

E

R

D

D

A

S

G

G

F

L

Y

W

Y

F

A

P

P

V

D

D

P
|
P

S
x
G

S
x
A

Q

D

I

-

A

-

C

A

T

S

I

L

G

C

G
|
G

N
x
M

V

A

A
|
A

E
x
T

N

G

S
x
A

G
x
S

G

G

V

T

H

N

C

A

L

V

K

R

Y

Y

G

G

L

T

T

M

T

R

N

D

N

N

V

V

L

I

G

N

V

L

E

E

L

V

V

V

T

L

I

P

E

D

G

G

E

R

V

L

R

H

L

T

G

A

G

G

R

R

G

G

L

R

E

H

-

Y

-

R

-

K

-

S

P

A

A

A

G

G

L

Y

D

N

L

L

L

T

G

G

V

L

I

F

V

V

G

G

S

S

E
|
E

G
|
G

L

T

L

L

G

G

V

I

V
x
I

T

T

E

S

V

T

T

T

V

L

R

R

I

L

L

H

P

P

R

A

P

P

E

E

T

A

A

T

K

V

A

A

L

A

L

T

I

C

G

A

F

F

P

P

D

S

V

V

E

Q

S

A

A

A

G

V

V

D

C

S

V

T

A

V

Q

Q

I

I

I

L

A

Q

A

A

G

A

I

V

I

P

P

V

A

A

G

R

M

I

E

E

M

F

M

L

D

D

K

D

P

V

A

M

I

M

N

D

A

A

A

C

E

N

A

R

F

H

V

-

N

-

A

-

G

S

Y

L

P

N

L

C

D

P

V

V

E

A

A

P

L

T

L

L

I

F

V

L

E

E

L

F

D

H

G

G

P

S

G

Q

A

Q

E

T

C

L

G

A

H

E

L

Q

T

L

G

Q

E

R

V

T

E

E

A

A

I

I

A

T

R

Q

A

D

H

N

G

G

A

G

V

S

S

H

V

F

Q

S

A

W

S

A

R

A

D

E

D

-

A

-

E

K

R

R

A

N

L

E

F

L

W

W

A

A

G

A

R
|
R

K

H

A

N

A

A

F
x
W

P

Y

A

A

G

L

R

A

I

L

S

S

P

P

-

G

-

S

D

K

Y

A

Y

Y

C

S

M

T

D

D

G

V

T

C

I

V

P

P

R

I

R

S

R

R

L

L

P

P

E

E

V

I

L

L

T

V

R

E

M

T

K

K

A

E

L

E

S

I

E

K

Q

A

Y

S

G

K

L

L

G

T

V

G

I

A

N

I

V

V

F

G

H
|
H

A

V

G

G

D

D

G

G

N

N

L

F

H
|
H

P

C

L

I

I

L

L

L

Y

V

D

D

A

P

N

D

Q

D

P

A

G

E

Q

E

L

Q

E

R

R

R

A

V

E

K

A

A

F

F

G

A

A

E

D

N

I

L

L

G

K

R

L

R

C

A

V

L

E

A

V

L

G

G

V

T

L

C

T

T

G

G

E
|
E

H
|
H

G

G

V

I

G

G

V

L

E

G

K

K

R

R

D

Q

L

L

M

L

H

Q

T

E

M

E

F

V

S

G

E

P

T

V

D

G

L

V

A

E

Q

T

Q

M

Q

R

R

Q

V

L

K

K

C

N

A

T

F

L

D

D

P

P

E

R

L

G

L

L

L

M

N
|
N

P

P

G

G

K

K

M

V

F

L

binding flavin-adenine dinucleotide: E32 (≠ A42), P68 (= P78), G70 (= G80), T71 (≠ A81), G72 (= G82), T73 (= T83), G74 (≠ S84), G78 (= G88), V79 (≠ A89), L90 (≠ M100), P132 (= P142), G133 (≠ S143), A134 (≠ S144), G140 (= G152), M141 (≠ N153), A143 (= A155), T144 (≠ E156), A146 (≠ S158), S147 (≠ G159), E200 (= E208), G201 (= G209), I206 (≠ V214), W322 (≠ F335), E413 (= E424), H414 (= H425), N450 (= N461)
binding 3-methyl-2-oxobutanoic acid: R318 (= R331), H369 (= H380), H376 (= H387), H414 (= H425)
binding manganese (ii) ion: H369 (= H380), H376 (= H387), E413 (= E424)

8jdrA Crystal structure of h405a mldhd in complex with d-2-hydroxy-3-methyl- valeric acid (see paper)
30% identity, 92% coverage: 14:466/493 of query aligns to 4:456/456 of 8jdrA

query
sites
8jdrA

E

D

I

F

V

V

A

E

A

A

M

L

R

K

A

A

I

V

V

V

P

G

G

S

E

P

G

H

V

V

I

S

D

T

A

A

L

S

E

A

A

V

L

R

R

E

P

Q

Y

H

E

G

S

H

D

D

A

E

L

S

T

M

A

H

Y

R

A

C

Q

Q

V

P

P

P

L

D

L

A

V

V

L

W

P

P

E

Q

T

N

V

V

E

D

Q

Q

V

V

A

S

A

R

V

V

L

A

R

S

W

L

C

C

H

Y

E

N

N

Q

R

G

V

V

K

P

V

I

P
|
P

R

F

G
|
G

A
x
T

G
|
G

T
|
T

S
x
G

L

V

S

E

G

G

G
|
G

A
x
V

L

C

P

A

L

V

A

Q

D

G

G

G

V

V

L

C

L

I

G

N

M
x
L

A

T

R

H

F

M

N

D

R

Q

V

I

L

T

D

E

I

L

D

N

Y

T

A

E

D

D

R

F

V

S

A

V

V

V

Q

E

P

P

G

G

V

V

T

T

N

R

L

K

A

A

I

L

T

N

R

T

A

H

V

L

E

R

D

D

A

S

G

G

F

L

Y

W

Y

F

A

P

P

V

D

D

P
|
P

S
x
G

S
x
A

Q

D

I

-

A

-

C

A

T

S

I

L

G

C

G
|
G