Comparing Ga0059261_2633 FitnessBrowser__Korea:Ga0059261_2633 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
2wdrB E. Coli succinate:quinone oxidoreductase (sqr) with pentachlorophenol bound (see paper)
25% identity, 22% coverage: 8:103/429 of query aligns to 132:233/238 of 2wdrB
Sites not aligning to the query:
2wdqB E. Coli succinate:quinone oxidoreductase (sqr) with carboxin bound (see paper)
25% identity, 22% coverage: 8:103/429 of query aligns to 132:233/238 of 2wdqB
Sites not aligning to the query:
2aczB Complex ii (succinate dehydrogenase) from e. Coli with atpenin a5 inhibitor co-crystallized at the ubiquinone binding site (see paper)
25% identity, 22% coverage: 8:103/429 of query aligns to 132:233/238 of 2aczB
Sites not aligning to the query:
1nenB Complex ii (succinate dehydrogenase) from e. Coli with dinitrophenol-17 inhibitor co-crystallized at the ubiquinone binding site (see paper)
25% identity, 22% coverage: 8:103/429 of query aligns to 132:233/238 of 1nenB
Sites not aligning to the query:
1nekB Complex ii (succinate dehydrogenase) from e. Coli with ubiquinone bound (see paper)
25% identity, 22% coverage: 8:103/429 of query aligns to 132:233/238 of 1nekB
Sites not aligning to the query:
P07014 Succinate dehydrogenase iron-sulfur subunit; EC 1.3.5.1 from Escherichia coli (strain K12) (see paper)
25% identity, 22% coverage: 8:103/429 of query aligns to 132:233/238 of P07014
>Ga0059261_2633 FitnessBrowser__Korea:Ga0059261_2633
MQTRFTPEQLADPAMASSEGVIRKCVHCGFCTATCPTYALLGDELDSPRGRIYLIKDMLE
NQRKPGPETVKHIDRCLSCLSCMTTCPSGVNYMHLVDHARAYIHENYGRPWHERAVRRLL
AWVLPYPGRFRAALLLARLGRPFAPLVAGVKPLAAMLAMAPKQVPAPVAAENASVPGAKG
RIALLQGCAEPVLKPEYRAAAIRLLNRAGYDVVFAAGEGCCGALVHHMGREADGLDAARR
NVDAWMREIDGGGLAAIVVTASGCGTTIKDYGFMLRNDPAYAGKAALVSGLAKDISELLA
QIDLPPGNGRGLTVAYHPACSLQHGQKVTDAPKRLLAAAGYAVRTPAEAHLCCGSAGTYN
ILQPEIADQLGDRKASHLDRLQADVIATGNVGCAMQIARFGDTPVVHTIELLDWATGGPA
PAVLTHRDA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory