Comparing Ga0059261_2879 FitnessBrowser__Korea:Ga0059261_2879 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8gobA Crystal structure of glycerol dehydrogenase in the presence of NAD+ (see paper)
38% identity, 99% coverage: 1:356/358 of query aligns to 1:361/367 of 8gobA
8goaA Crystal structure of glycerol dehydrogenase in the absence of NAD+ (see paper)
38% identity, 99% coverage: 1:356/358 of query aligns to 1:361/367 of 8goaA
5zxlA Structure of glda from e.Coli (see paper)
38% identity, 99% coverage: 1:356/358 of query aligns to 1:361/367 of 5zxlA
P0A9S5 Glycerol dehydrogenase; GDH; GLDH; (R)-aminopropanol dehydrogenase; 1,2-propanediol dehydrogenase; D-1-amino-2-propanol oxidoreductase; EC 1.1.1.6; EC 1.1.1.75 from Escherichia coli (strain K12) (see paper)
38% identity, 99% coverage: 1:356/358 of query aligns to 1:361/367 of P0A9S5
Q9WYQ4 Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
39% identity, 88% coverage: 8:323/358 of query aligns to 8:325/364 of Q9WYQ4
1kq3A Crystal structure of a glycerol dehydrogenase (tm0423) from thermotoga maritima at 1.5 a resolution (see paper)
39% identity, 88% coverage: 8:323/358 of query aligns to 9:326/364 of 1kq3A
4mcaA Crystal structure of glycerol dehydrogenase from serratia to 1.9a
35% identity, 90% coverage: 1:323/358 of query aligns to 1:327/367 of 4mcaA
1ta9B Crystal structure of glycerol dehydrogenase from schizosaccharomyces pombe
34% identity, 99% coverage: 3:356/358 of query aligns to 8:367/394 of 1ta9B
O13702 Glycerol dehydrogenase 1; GDH; GLDH; EC 1.1.1.6 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
34% identity, 99% coverage: 3:356/358 of query aligns to 64:423/450 of O13702
P32816 Glycerol dehydrogenase; GDH; GLDH; GlyDH; EC 1.1.1.6 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see 2 papers)
33% identity, 98% coverage: 3:354/358 of query aligns to 5:361/370 of P32816
1jq5A Bacillus stearothermophilus glycerol dehydrogenase complex with NAD+ (see paper)
33% identity, 98% coverage: 3:354/358 of query aligns to 4:360/366 of 1jq5A
5xn8A Structure of glycerol dehydrogenase crystallised as a contaminant
34% identity, 91% coverage: 1:326/358 of query aligns to 1:330/365 of 5xn8A
1jqaA Bacillus stearothermophilus glycerol dehydrogenase complex with glycerol (see paper)
32% identity, 98% coverage: 3:354/358 of query aligns to 3:355/361 of 1jqaA
3uhjA Crystal structure of a probable glycerol dehydrogenase from sinorhizobium meliloti 1021
35% identity, 94% coverage: 1:335/358 of query aligns to 1:331/357 of 3uhjA
4rgqB Crystal structure of the methanocaldococcus jannaschii g1pdh with NADPH and dhap (see paper)
29% identity, 46% coverage: 8:170/358 of query aligns to 6:149/333 of 4rgqB
Sites not aligning to the query:
4rgvA Crystal structure of the methanocaldococcus jannaschii g1pdh (see paper)
31% identity, 43% coverage: 16:170/358 of query aligns to 13:144/328 of 4rgvA
Sites not aligning to the query:
5fb3F Structure of glycerophosphate dehydrogenase in complex with NADPH (see paper)
26% identity, 85% coverage: 5:310/358 of query aligns to 6:295/337 of 5fb3F
3ce9A Crystal structure of glycerol dehydrogenase (np_348253.1) from clostridium acetobutylicum at 2.37 a resolution
28% identity, 62% coverage: 80:301/358 of query aligns to 83:300/349 of 3ce9A
Q9YER2 Glycerol-1-phosphate dehydrogenase [NAD(P)+]; G1P dehydrogenase; G1PDH; Gro1PDH; Enantiomeric glycerophosphate synthase; sn-glycerol-1-phosphate dehydrogenase; EC 1.1.1.261 from Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (see paper)
27% identity, 70% coverage: 82:331/358 of query aligns to 91:336/352 of Q9YER2
3ox4A Structures of iron-dependent alcohol dehydrogenase 2 from zymomonas mobilis zm4 complexed with NAD cofactor (see paper)
27% identity, 71% coverage: 55:308/358 of query aligns to 70:342/382 of 3ox4A
Sites not aligning to the query:
>Ga0059261_2879 FitnessBrowser__Korea:Ga0059261_2879
MIRIFGGPTRYVQGPGAIGELGTLTERLTKRPLLVVDADVLPFVEAQLSTAFAGRPSITL
AFRGEVTHAAIDLLVEQAGDADCVIGIGGGKGLDAAKGVAFKLGLPFIAVPSIASNDSPT
GRSMAIYNDEHVLVAIETIPDSPLLVVTDTQLIANAPARFLRTGMGDALAKKFEAERAVA
DGASNFFGTRQLRTALAIADACYQTLREHGVAAMAAAERHEPDEAFEAVVEANVLMAGLA
WESGGLSYAHAVVRGLVKARGAASAPHGDHVGYATLVQLAIEGRDDGFILDVIGFNRSVG
LPASLAELDMGSPTPDEIAEIARLTTIGPKGGRIIVNAGPGQIADAIKRVEQLATRES
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory