SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ga0059261_3962 FitnessBrowser__Korea:Ga0059261_3962 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2q7sB Crystal structure of n-formylglutamate amidohydrolase (yp_297560.1) from ralstonia eutropha jmp134 at 2.00 a resolution
29% identity, 85% coverage: 5:228/264 of query aligns to 10:249/280 of 2q7sB

query
sites
2q7sB
E
 
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L
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R
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G
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D
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T
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H
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V
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D
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A
L
 
L
Y
 
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A
 
E
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A
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V
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P
G
 
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V
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G
A
 
G
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I
 
L
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L
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A
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A
T
 
T
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F
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V
 
Y
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I
D
 
D
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N
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D
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I
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A
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-
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A
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A
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A
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Q
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E
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L
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E

Query Sequence

>Ga0059261_3962 FitnessBrowser__Korea:Ga0059261_3962
MIHVEQGSAPLIVSVPHAGTVIPADIQGLVSPELARYDADLYVDHLYAFARGLDATIVRT
TVSRTVIDVNRDPSGQTLYPGQFTTGLCPIQTFDGTPLYEPGALPDAHEIERRRAEWFDP
YHTALAIQIERLRAIHPAIVVYDAHSIRSVVPKLFDGELPNFNIGTNDGTSCAPALTQAV
EAICDASPYSRVTNGRFKGGWITRHYARPAGGVHSIQMELAMRTYLVETPAHWPPPWHEE
TAQACQSVLRPILSAAIDFAKAPK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory