SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Ga0059261_3996 FitnessBrowser__Korea:Ga0059261_3996 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1yleA The structure of arginine/ornithine succinyltransferase subunit ai from pseudomonas aeruginosa.
33% identity, 98% coverage: 3:332/336 of query aligns to 4:324/330 of 1yleA

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sites
1yleA
F
 
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L
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E
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R

Query Sequence

>Ga0059261_3996 FitnessBrowser__Korea:Ga0059261_3996
MTFLIRPAREDDLQALYEMAKLTGGGFTNLPPEKPALRAKLERSALAFSRTDDALKDELF
VLVLENSETHEVRGTCQIFTQVGQRWPFYSYRLGIETKHSEALARTFRAEILSLTNDLEG
CSEVGGLFLHPGERAGGLGMLLARSRYLFIAMHRARFGDRVLAELRGVIDEAGGSPFWDG
VAGRFFGMNFQQADEFNAIHGNQFIADLMPKHPIYTAMLTEGARSVIGLPHPSGRAAMRM
LEQEGFAFENYIDIFDGGPTMTARTDQVMTVRDSRTDKVVDIADGGSASIIARGTLSDFR
ACHGRIGLSDGGVTVDAMSASILGVEAGQEVRHAPR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory