Comparing H281DRAFT_01744 H281DRAFT_01744 TRAP transporter, DctM subunit to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
30% identity, 66% coverage: 211:626/631 of query aligns to 5:419/427 of 8b01B
>H281DRAFT_01744 H281DRAFT_01744 TRAP transporter, DctM subunit
MTTFSATPGPETQLAAPGFGHETMLARGLARLMRWIEYLCAAVLAADVLVVFLSVIYRYF
LHDPFDWAEEVAGALMIVLVFFGAATVLARSQHVGVDLFRGMLPMRWQPALVHVGHWVIV
GVAGNLCVSSCLLLVDSYGQMTPSGLPAWINVYPLVIGSVFMTIFALANAVNGARKTVLG
TLIGCLLLAAAVFAWNASVPAHAIKPGSLLIAGFVGALVLGVPIGFVLAFSALLYFLADP
SLPMLVYSQQVMAGTDHFVLLAIPFFVLAGLLMETNGMSSRLIELLLRIFGRVRGGLGLI
TIMATAFFSGVSGSKLADIAAVGGVVMPAVRQSKEDPNEAAALLACSAVMAETIPPCVNM
IIMGFVANISIAGLFLAGVVPAAVLAVALAIVAVIFGRRINLADALTNPRAWMPLLGGAL
VALVMITMIGKGVTSGIATSTEVSAFAVVYALIVGWLAFRELTPKSVARVFVRSASMASS
ILFIVAAASSVSFALTIEQIPALVSDSMIAFAHQYGPTMFLLLSVLIMIVFGAVLEGAPA
LIIFGPLLTPIATQLGINPLHFGTVIVVAMGLGLFAPPVGLGLFATCAITGTEMKAVARP
MLKYLLVLCIALVVLVLVPSFSLWLPTRLGL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory