Comparing H281DRAFT_03129 FitnessBrowser__Burk376:H281DRAFT_03129 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3zs6A The structural characterization of burkholderia pseudomallei oppa. (see paper)
74% identity, 94% coverage: 33:537/538 of query aligns to 1:506/506 of 3zs6A
3tcfA Crystal structure of e. Coli oppa complexed with endogenous ligands (see paper)
43% identity, 95% coverage: 27:538/538 of query aligns to 3:517/517 of 3tcfA
2z23A Crystal structure of y.Pestis oligo peptide binding protein oppa with tri-lysine ligand (see paper)
42% identity, 95% coverage: 26:538/538 of query aligns to 2:517/517 of 2z23A
2rkmA Structure of oppa complexed with lys-lys (see paper)
41% identity, 95% coverage: 27:538/538 of query aligns to 3:517/517 of 2rkmA
1olcA Oligo-peptide binding protein (oppa) complexed with lys-lys- lys-ala (see paper)
41% identity, 95% coverage: 27:538/538 of query aligns to 3:517/517 of 1olcA
1b05A Structure of oligo-peptide binding protein complexed with lys-cys-lys (see paper)
41% identity, 95% coverage: 27:538/538 of query aligns to 3:517/517 of 1b05A
6dtgA Crystal structure of haemophilus influenzae oppa complex with ylgangrgggs (see paper)
38% identity, 96% coverage: 25:538/538 of query aligns to 2:522/522 of 6dtgA
3o9pA The structure of the escherichia coli murein tripeptide binding protein mppa (see paper)
37% identity, 94% coverage: 33:538/538 of query aligns to 3:509/509 of 3o9pA
P24141 Oligopeptide-binding protein OppA; Stage 0 sporulation protein KA from Bacillus subtilis (strain 168) (see paper)
30% identity, 94% coverage: 1:507/538 of query aligns to 1:517/545 of P24141
8arnA Crystal structure of the peptide binding protein, oppa, from bacillus subtilis in complex with an endogenous tetrapeptide (see paper)
31% identity, 87% coverage: 42:507/538 of query aligns to 9:481/509 of 8arnA
8ay0B Crystal structure of the peptide binding protein dppe from bacillus subtilis in complex with murein tripeptide (see paper)
30% identity, 84% coverage: 66:518/538 of query aligns to 31:479/496 of 8ay0B
Sites not aligning to the query:
6npoA Crystal structure of oligopeptide abc transporter from bacillus anthracis str. Ames (substrate-binding domain)
30% identity, 91% coverage: 33:523/538 of query aligns to 3:504/518 of 6npoA
4gl8A X-ray crystal structure of a periplasmic oligopeptide-binding protein/oligopeptide abc transporter(oppaiv) from borrelia burgdorferi
29% identity, 86% coverage: 42:503/538 of query aligns to 7:467/500 of 4gl8A
5kztB Listeria monocytogenes oppa bound to peptide
29% identity, 91% coverage: 49:537/538 of query aligns to 17:509/510 of 5kztB
4fajA Structure and mode of peptide binding of pheromone receptor prgz (see paper)
27% identity, 87% coverage: 48:516/538 of query aligns to 14:486/507 of 4fajA
8upiA Structure of a periplasmic peptide binding protein from mesorhizobium sp. Ap09 bound to aminoserine
25% identity, 91% coverage: 39:526/538 of query aligns to 5:496/510 of 8upiA
1uqwA Crystal structure of ylib protein from escherichia coi
23% identity, 87% coverage: 35:503/538 of query aligns to 1:455/487 of 1uqwA
Sites not aligning to the query:
7kz9A Crystal structure of pseudomonas sp. Pdc86 substrate-binding protein aapf in complex with a signaling molecule heheaa (see paper)
24% identity, 84% coverage: 66:519/538 of query aligns to 31:462/478 of 7kz9A
Sites not aligning to the query:
6hlxA Structure of the pbp agaa in complex with agropinic acid from a.Tumefacien r10 (see paper)
23% identity, 89% coverage: 43:521/538 of query aligns to 7:466/491 of 6hlxA
Sites not aligning to the query:
4i8cA X-ray structure of nika in complex with ni-(l-his)2 (see paper)
24% identity, 90% coverage: 35:517/538 of query aligns to 1:480/499 of 4i8cA
>H281DRAFT_03129 FitnessBrowser__Burk376:H281DRAFT_03129
MKTPFAYATALSALVLTFTSSAFAVTVPPGVTLAASQEITRQVPAETESLDPAHIESWTG
NTIALDMFEGLTRIDAAGAVVPGVAQSWTRTGPDTWVFKLRHDARWSNGQPVTAADFIYA
WQRVLDPKTGSKYTVLVEFVKNAKAILAGKAPLASLGARAVDPYTIEVTTEVPAAFFPQL
AAMPTMAPVNRDVVARFGNEWTRPGNFVGNGPYMLADWQPNNRLVGAKSKTYWNASKVVI
TKVTYLPIENDETAMRMYQAGQFDYTYSIPSGIYAQVSKQFGPELKTGLQIATYYYSLNN
EDPIFKDKRVRQALSMVLDRDLLTQRLTADGELPMYGLISKGTQGAAVFKPDWAGWPMAK
RVDYARNLLKSAGYSDAKPLTFTLTYNTNDLHKKVALFATSEWRTKLGVNTKLENVEYKV
LLKQRHDGKVQASRDGWFVDYNDAMSYFDLIRCNSVQNDQRYCNPQVDKIVDEANQQLDD
AKRTELLTKAHDTAMNDYPMVPLFQYSAVRLVKPYVGGYTSTNYVDQRATQDMYLIKH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory