SitesBLAST – Find functional sites

 

SitesBLAST

Comparing H281DRAFT_03532 FitnessBrowser__Burk376:H281DRAFT_03532 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6u7lA 2.75 angstrom crystal structure of galactarate dehydratase from escherichia coli. (see paper)
28% identity, 87% coverage: 16:397/441 of query aligns to 111:436/460 of 6u7lA

query
sites
6u7lA
L
 
F
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E
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G
Y
 
Y
P
 
R
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N
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L
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C
 
C
A
 
V
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A
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G
V
 
V
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V
R
 
D
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V
T
 
K
E
 
I
F
 
I
-
 
E
R
 
R
E
 
D
P
 
L
L
 
L
D
 
P
A
 
K
F
 
Y
G
 
P
D
 
N
T
 
V
F
 
-
A
 
-
D
 
D
G
 
G
S
 
V
A
 
V
G
 
G
R
 
L
E
 
N
P
 
-
P
 
-
V
 
-
H
 
H
L
 
L
I
 
Y
G
 
G
F
 
C
P
 
-
G
 
G
C
 
A
Y
 
P
P
 
A
N
 
A
E
 
V
Y
 
V
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P
E
 
I
K
 
R
M
 
T
L
 
I
E
 
H
R
 
N
L
 
I
T
 
S
T
 
L
H
 
N
P
 
P
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N
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F
G
 
G
A
 
G
V
 
-
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-
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-
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-
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-
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-
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-
G
 
-
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-
P
 
-
V
 
-
E
 
E
V
 
V
L
 
M
T
 
V
I
 
I
Q
 
G
E
 
K
K
 
H
G
 
V
G
 
G
T
 
F
R
 
Q
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S
T
 
M
I
 
V
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E
Y
 
D
G
 
I
V
 
L
D
 
Q
W
 
I
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A
R
 
E
G
 
R
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H
R
 
L
K
 
Q
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K
L
 
L
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N
A
 
Q
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R
E
 
Q
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R
V
 
E
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T
M
 
C
A
 
P
L
 
A
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S
E
 
E
L
 
L
V
 
V
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V
G
 
G
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M
I
x
Q
C
|
C
G
 
G
G
 
G
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S
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D
G
 
A
T
 
F
S
 
S
G
 
G
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V
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T
A
 
A
N
 
N
P
 
P
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A
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V
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G
R
 
Y
A
 
A
F
 
S
D
 
D
H
 
L
L
 
L
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V
D
 
R
A
 
C
G
 
G
A
 
A
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T
C
 
V
I
 
M
F
 
F
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S
E
|
E
T
 
V
G
 
T
E
 
E
L
 
V
V
 
R
G
 
D
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A
E
 
I
F
 
H
H
 
L
M
 
L
K
 
T
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P
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R
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A
A
 
V
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N
P
 
E
E
 
E
L
 
V
G
 
G
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K
A
 
R
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L
V
 
L
A
 
E
C
 
E
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M
A
 
E
K
 
W
A
 
Y
A
 
D
R
 
N
Y
 
Y
Y
 
L
S
 
-
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-
L
 
-
G
 
-
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-
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-
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-
F
 
-
A
 
-
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-
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-
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-
A
 
-
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N
G
 
G
G
 
G
L
 
L
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A
T
 
N
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V
E
 
V
E
 
E
K
 
K
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A
L
 
L
G
 
G
A
 
S
Y
 
I
A
 
A
K
 
K
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S
G
 
G
A
 
K
S
 
S
P
 
A
I
 
I
A
 
V
G
 
E
I
 
V
V
 
L
K
 
S
P
 
P
G
 
G
D
 
Q
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T
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K
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G
L
 
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V
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I
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K
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M
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A
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E
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L
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A
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D
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L
M
 
M
D
 
D
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I
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A
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T
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A
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T
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G
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E
G
 
E
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E
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E
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V
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K
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L
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F
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H
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L
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A
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S
G
 
G

Query Sequence

>H281DRAFT_03532 FitnessBrowser__Burk376:H281DRAFT_03532
MTETLVATASAQQPMLQGYPRSDGRKGIRNVVAVAYLVECAHHVAREIVTEFREPLDAFG
DTFADGSAGREPPVHLIGFPGCYPNEYAEKMLERLTTHPNVGAVLFVSLGCESMNKHYLV
DVVRASGRPVEVLTIQEKGGTRSTIQYGVDWVRGARKQLAAQEKVPMALSELVIGTICGG
SDGTSGITANPAVGRAFDHLIDAGATCIFEETGELVGCEFHMKTRAARPELGDAIVACVA
KAARYYSILGHGSFAVGNADGGLTTQEEKSLGAYAKSGASPIAGIVKPGDIPPTGGLYLL
DVVPDGEPRFGFPNISDNAEIGELIACGAHVILFTTGRGSVVGSAISPVIKICANPATYR
NLAGDMDVDAGRILEGRGTLDEVGREVFEQTVAVSQGAPSKSEMLGHQEFILTYKTFEPV
GPACLPSNTVAPRRVVTVAPH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory