Comparing H281DRAFT_03904 FitnessBrowser__Burk376:H281DRAFT_03904 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
4qhqA The structure of a nutrient binding protein from burkholderia cenocepacia bound to methionine
59% identity, 89% coverage: 30:265/265 of query aligns to 2:241/241 of 4qhqA
3tqwA Structure of a abc transporter, periplasmic substrate-binding protein from coxiella burnetii (see paper)
54% identity, 89% coverage: 30:264/265 of query aligns to 2:235/235 of 3tqwA
4yahX Crystal structure of the methionine binding protein, metq (see paper)
53% identity, 90% coverage: 28:265/265 of query aligns to 3:243/245 of 4yahX
P04846 Lipoprotein 28 from Escherichia coli (strain K12) (see paper)
48% identity, 89% coverage: 30:265/265 of query aligns to 34:272/272 of P04846
Sites not aligning to the query:
3k2dA Crystal structure of immunogenic lipoprotein a from vibrio vulnificus (see paper)
51% identity, 85% coverage: 25:249/265 of query aligns to 2:228/237 of 3k2dA
4ib2A Crystal structure of a putative lipoprotein (rumgna_00858) from ruminococcus gnavus atcc 29149 at 1.76 a resolution
42% identity, 88% coverage: 29:262/265 of query aligns to 7:244/247 of 4ib2A
6dzxA Crystal structure of the n. Meningitides methionine-binding protein in its d-methionine bound conformation. (see paper)
39% identity, 87% coverage: 29:259/265 of query aligns to 1:231/240 of 6dzxA
3gxaC Crystal structure of gna1946 (see paper)
39% identity, 87% coverage: 29:259/265 of query aligns to 2:232/244 of 3gxaC
1p99A 1.7a crystal structure of protein pg110 from staphylococcus aureus (see paper)
43% identity, 80% coverage: 44:254/265 of query aligns to 15:230/255 of 1p99A
4oteB Crystal structure of a putative lipoprotein (cd630_1653) from clostridium difficile 630 at 2.20 a resolution
37% identity, 89% coverage: 30:265/265 of query aligns to 6:240/240 of 4oteB
1xs5A The crystal structure of lipoprotein tp32 from treponema pallidum (see paper)
32% identity, 88% coverage: 27:259/265 of query aligns to 2:234/240 of 1xs5A
6jf1A Crystal structure of the substrate binding protein of a methionine transporter from streptococcus pneumoniae (see paper)
36% identity, 87% coverage: 36:265/265 of query aligns to 21:260/260 of 6jf1A
Sites not aligning to the query:
4ntlA Crystal structure of a lipoprotein, yaec family (ef3198) from enterococcus faecalis v583 at 1.80 a resolution
31% identity, 89% coverage: 29:265/265 of query aligns to 3:242/242 of 4ntlA
>H281DRAFT_03904 FitnessBrowser__Burk376:H281DRAFT_03904
MQRRFIFKLAAALGAVSIFAANAAHAEDSIKVGVTGGPHAQIMEVVKTVAAKNGLNIKIV
EFSDYVQPNAALAGGDLDANSYQHDPYLQAQVKDRGYKLIRVADTVTYPMGIYSKKVKTL
AELQQGAKIAVPNDPTNGGRALLLLQKQGLLKLRADAGLKATPLDIVDNPRKLKIVELDA
AQIPRSLNDVDAAAINTNFAMEAGLKPKQDAIAIEDPKGPYVNIIAIREADKNKPWVAKL
VAAYHSPEVKQFVEGKFGGAVITAW
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory