SitesBLAST – Find functional sites

 

SitesBLAST

Comparing H281DRAFT_03948 FitnessBrowser__Burk376:H281DRAFT_03948 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6rw3A The molecular basis for sugar import in malaria parasites. (see paper)
22% identity, 72% coverage: 62:374/433 of query aligns to 57:385/437 of 6rw3A

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6rw3A
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A

Query Sequence

>H281DRAFT_03948 FitnessBrowser__Burk376:H281DRAFT_03948
MSTASHAISSSQESKAKTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGSEFASLMLS
LSVFGAGFLMRPLGAIVLGAYIDHHGRRKGLILTLGLMALGTLTVASIPGYATIGLLAPV
LVLLGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYCAWQSGSQQVAVVFAALLGVMLNK
MLPADQMSAWGWRVPFLIGCLIVPFLFMIRRSLKETEEFSARKHRPGMGEIMKTMAANWG
TVLGGMGMVIMTTVSFYMITAYTPTFGKEVLKLSSIDTLVVTVCIGLSNLIWLPLAGALS
DRIGRRPVLLAFTALTIVTAYPALQWLVAEPSFARLLAVELWLSFLYGSYNGAMVVALTE
VMPVEVRTAGFSLAYSLATTIGGFTPAISTLLIHSTGNKAAPGLFLGVAAICGLIATLVL
YRTPESRDQYKAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory