Comparing H281DRAFT_04149 FitnessBrowser__Burk376:H281DRAFT_04149 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
42% identity, 98% coverage: 1:494/506 of query aligns to 1:491/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 43% coverage: 4:220/506 of query aligns to 2:215/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 42% coverage: 7:220/506 of query aligns to 4:215/240 of 4ymuJ
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
32% identity, 43% coverage: 4:221/506 of query aligns to 3:218/223 of 2pclA
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 43% coverage: 4:220/506 of query aligns to 3:216/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 43% coverage: 4:220/506 of query aligns to 3:216/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 43% coverage: 4:220/506 of query aligns to 3:216/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 43% coverage: 4:220/506 of query aligns to 3:216/242 of 2oljA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
26% identity, 44% coverage: 4:227/506 of query aligns to 1:227/343 of P30750
Sites not aligning to the query:
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 43% coverage: 4:220/506 of query aligns to 4:229/253 of 1g9xB
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
26% identity, 44% coverage: 4:227/506 of query aligns to 2:228/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
26% identity, 44% coverage: 4:227/506 of query aligns to 2:228/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
26% identity, 44% coverage: 4:227/506 of query aligns to 2:228/344 of 6cvlD
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
27% identity, 53% coverage: 1:266/506 of query aligns to 1:257/285 of 4yerA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 43% coverage: 4:220/506 of query aligns to 4:229/254 of 1g6hA
5x40A Structure of a cbio dimer bound with amppcp (see paper)
32% identity, 50% coverage: 1:252/506 of query aligns to 1:243/280 of 5x40A
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
32% identity, 43% coverage: 1:220/506 of query aligns to 1:222/648 of P75831
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
30% identity, 46% coverage: 5:239/506 of query aligns to 7:244/375 of 2d62A
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
32% identity, 42% coverage: 5:218/506 of query aligns to 4:211/369 of P19566
Sites not aligning to the query:
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 42% coverage: 9:220/506 of query aligns to 8:220/353 of 1oxvD
>H281DRAFT_04149 FitnessBrowser__Burk376:H281DRAFT_04149
MDTILKLDNITKSFPGVKALQGIHLEIARGEIHALLGENGAGKSTLMKILCGIYQPDEGT
ITIEGEPRHFANYHDAVAAGVGIVFQEFSLIPYLNAVENMFLGREMKNGLGLLNRGGMRR
VAAEIFGRLGVSIDLSVPIRELSVAQQQFVEIGKALSLEARILILDEPTATLTPAEAEHL
FAIMRDLKKQGVAMIFISHHLEEIFEVCDRITVLRDGQYVGMTEVAQSDVGRLVEMMVGR
RIESSFPPKPPLRPDAKVVLDVQKLQLLKDSPMLQFTLREGEILGFAGLVGSGRTETALA
VIGADPAHVKEIRINGEAANLSDPADALRAGVGILPESRKTEGLITDFSIKQNISINNLG
KYRSLRFFIDQRSEARATADIMKRVGVKAPTMHTEVATLSGGNQQKVVIARWLNHHTNIL
IFDEPTRGIDVGAKAEIYLLMRELTARGYSIIMISSELPEIVGMCDRVAVFRQGRIEALL
EGDQIDSNAVMTYATAGTRGAQHEHA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory