Comparing H281DRAFT_04150 FitnessBrowser__Burk376:H281DRAFT_04150 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
37% identity, 85% coverage: 43:313/317 of query aligns to 3:274/274 of 2ioyA
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
33% identity, 88% coverage: 38:317/317 of query aligns to 6:284/284 of 7e7mC
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
35% identity, 77% coverage: 42:284/317 of query aligns to 4:256/287 of 5dteB
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
33% identity, 84% coverage: 43:309/317 of query aligns to 4:270/271 of 1dbpA
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
29% identity, 87% coverage: 42:316/317 of query aligns to 3:287/292 of 2fn8A
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
31% identity, 84% coverage: 43:307/317 of query aligns to 5:268/270 of 4zjpA
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
32% identity, 80% coverage: 41:294/317 of query aligns to 9:270/296 of 4irxA
5hqjA Crystal structure of abc transporter solute binding protein b1g1h7 from burkholderia graminis c4d1m, target efi-511179, in complex with d-arabinose
33% identity, 56% coverage: 53:231/317 of query aligns to 18:199/289 of 5hqjA
Sites not aligning to the query:
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
31% identity, 87% coverage: 41:315/317 of query aligns to 3:290/297 of 4ry9B
4ry9A Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
31% identity, 87% coverage: 41:315/317 of query aligns to 3:290/297 of 4ry9A
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
29% identity, 83% coverage: 45:308/317 of query aligns to 6:282/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
29% identity, 83% coverage: 45:308/317 of query aligns to 6:282/288 of 1gudA
Sites not aligning to the query:
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
29% identity, 83% coverage: 45:308/317 of query aligns to 6:282/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
29% identity, 83% coverage: 45:308/317 of query aligns to 6:282/288 of 8wl9A
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
26% identity, 79% coverage: 62:312/317 of query aligns to 23:276/301 of 2x7xA
Sites not aligning to the query:
2rjoA Crystal structure of twin-arginine translocation pathway signal protein from burkholderia phytofirmans
30% identity, 69% coverage: 43:262/317 of query aligns to 6:239/322 of 2rjoA
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
27% identity, 70% coverage: 43:263/317 of query aligns to 9:234/287 of 4yo7A
Sites not aligning to the query:
A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
28% identity, 88% coverage: 19:297/317 of query aligns to 9:290/349 of A0QYB5
6hyhA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-fucofuranose (see paper)
28% identity, 64% coverage: 60:261/317 of query aligns to 21:234/304 of 6hyhA
Sites not aligning to the query:
6hbmA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with alpha-l-arabinofuranose (see paper)
28% identity, 64% coverage: 60:261/317 of query aligns to 21:234/304 of 6hbmA
Sites not aligning to the query:
>H281DRAFT_04150 FitnessBrowser__Burk376:H281DRAFT_04150
MTQTTFKHASLNTFARRGALFASLAFSLSMIAVPAAQAAPLKIGMTFQELNNPYFVTMQK
ALNDAAASTGATVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKKA
GVVVVAVDANANGPVDSFVGSKNFDAGQMACEYLSKSIGGSGEVAILDGIPVVPILERVR
GCKAALAKSPGVKLVDTQNGKQERATALSVTENMIQAHPNLKGVFSVNDGGSMGALSAIE
SSGKDIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIAYAKKWGANVPKAI
PVDVKMIDKSNAKGFSW
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory