Comparing H281DRAFT_04454 FitnessBrowser__Burk376:H281DRAFT_04454 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
37% identity, 98% coverage: 4:236/237 of query aligns to 6:239/240 of 1ji0A
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 96% coverage: 4:231/237 of query aligns to 2:231/241 of 4u00A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
27% identity, 98% coverage: 3:235/237 of query aligns to 1:235/240 of 6mjpA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 98% coverage: 3:235/237 of query aligns to 3:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 98% coverage: 3:235/237 of query aligns to 3:253/254 of 1g6hA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 86% coverage: 14:218/237 of query aligns to 11:218/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 95% coverage: 3:227/237 of query aligns to 2:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 95% coverage: 3:227/237 of query aligns to 2:229/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 95% coverage: 3:227/237 of query aligns to 2:229/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 95% coverage: 3:227/237 of query aligns to 2:229/242 of 2oljA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
28% identity, 98% coverage: 3:235/237 of query aligns to 1:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
28% identity, 98% coverage: 3:235/237 of query aligns to 1:235/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
28% identity, 98% coverage: 3:235/237 of query aligns to 1:235/235 of 6mhzA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
28% identity, 95% coverage: 1:225/237 of query aligns to 1:230/501 of P04983
6mbnA Lptb e163q in complex with atp (see paper)
27% identity, 99% coverage: 2:235/237 of query aligns to 1:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
28% identity, 98% coverage: 3:234/237 of query aligns to 1:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
28% identity, 98% coverage: 3:234/237 of query aligns to 1:234/234 of 4p31A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 89% coverage: 18:227/237 of query aligns to 19:232/343 of P30750
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
27% identity, 97% coverage: 3:233/237 of query aligns to 1:233/233 of 6b8bA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
31% identity, 85% coverage: 18:218/237 of query aligns to 21:224/226 of 5xu1B
>H281DRAFT_04454 FitnessBrowser__Burk376:H281DRAFT_04454
MTSLLDIRGLNAWYGPSQALHGVNLQIGAGEVLALVGRNGSGRSTLVRSIMGLVHAEGEL
RFAGHSLAGLRTFEIARLGIGYVPEHRDVFPTLSVGENLELGVAPRNRGRTPRFSIDDAY
SLFPVLHERRRTRAGALSGGEQQMLSLARALLGDPDLLLVDEPGEGLAGFVMQQVAQCLR
VLRERGMAMLLIEQRLVIAQDIASRVAVMGHGEIVFDGELNAFLQRPDVMREWLGVG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory