SitesBLAST – Find functional sites

 

SitesBLAST

Comparing H281DRAFT_05541 H281DRAFT_05541 TRAP transporter, DctM subunit to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
30% identity, 64% coverage: 226:642/647 of query aligns to 5:420/427 of 8b01B

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8b01B
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A
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N
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A
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A
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Q
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Q
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M
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G
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G
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L
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D
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N
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F
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T
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L
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L
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A
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V
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P
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F
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V
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L
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T
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G
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H
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L
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M
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N
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S
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A
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G
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E
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R
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F
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N
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F
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A
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K
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M
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G
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H
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I
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G
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L
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G
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H
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N
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I
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L
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A
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F
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M
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A
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Q
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A
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Y
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L
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T
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A
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A
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C
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N
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G
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A
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A
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G
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A
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C
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C
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A
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A
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Q

Query Sequence

>H281DRAFT_05541 H281DRAFT_05541 TRAP transporter, DctM subunit
MNDLFSNIATQDLHIAEAPAKVGGRVITSSAWGFGTLSTGGHLLATLCTFIERLCAVVLG
MDVLVVFVSVILRYFVHQPVDWAEEVARGLMIMMVFLGGATVLARRQHVNIDFFRALLPL
AWRAVALQIGYWVIAGTAGGLAYSAWLLLQDSANVTTPMGLPQWLNVLPVLLGALLMTVV
AVASAIAGAPRTIWLTLLACCIAAAALWGWNTEFEQYAVAPCAMLLAGFVGGLMVGVPIA
FVLALSALLYFISDPSLPMIVYSQQVMAGMDHFVLLAIPFFVLAGLVMEVNGMSSRLIEL
LVRIFGRVRGSMNLIAILATAFFSGVSGSKLADIAAVGGIVVPAVRRTKQDPNETAAVLA
ASGVMAETIPPCINMIIIGFVANISIGGLFLAGIVPAVVMAIALATLVVIFGKKIEPKTA
FESRRPICRLLGGALVALVMVIMIGKGVTSGVATSTEVSSFAVVYALVIGGFTFRELTPG
AIAALFVRAAAMAAGILFIIAAASSVAFALTILQIPAMLSAGMLALAHNYGSVAFLAVSV
LIMIVFGAILEGAPALIIFGPLLVPIAVHVGVNPLHFGTIAVTAMGLGLFSPPFGLGLCA
TCAMTGTRIEDVSRRMFKYLALLVVMLVLLVLVPSISLWLPRHFNMV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory