SitesBLAST – Find functional sites

 

SitesBLAST

Comparing H281DRAFT_06474 H281DRAFT_06474 amino acid ABC transporter membrane protein 1, PAAT family to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
33% identity, 93% coverage: 6:219/229 of query aligns to 11:213/215 of 4ymtC

query
sites
4ymtC
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L
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M
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L
A
 
F
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A
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L
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M
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M
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P
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I
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K
A
 
L
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V
A
 
A
T
 
S
G
 
S
Y
 
Y
T
 
I
T
 
E
L
 
V
I
 
I
R
 
R
S
 
G
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T
P
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P
D
x
L
L
 
L
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V
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Q
M
 
L
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L
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L
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I
F
 
Y
Y
 
-
S
 
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-
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-
N
 
N
N
 
G
L
 
L
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M
D
 
Q
-
 
F
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G
L
 
M
N
 
N
L
 
I
P
 
P
Q
 
A
F
 
F
D
 
T
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D
 
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A
 
A
G
 
G
V
 
V
L
 
S
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A
L
 
L
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A
F
 
I
I
x
N
Y
 
S
G
 
S
A
 
A
Y
|
Y
F
 
V
T
 
A
E
 
E
T
 
I
F
 
I
R
 
R
G
 
A
A
 
G
F
 
I
L
 
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A
 
A
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V
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D
R
 
P
G
 
G
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Q
L
 
N
E
 
E
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A
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A
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S
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L
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G
M
 
M
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A
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M
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A
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M
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R
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A
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I
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K
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N
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L
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A
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L
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G
N
 
N
N
x
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F
Q
 
I
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V
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x
M
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L
K
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K
A
x
E
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A
 
A
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I
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S
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V
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I
G
 
G
L
 
F
A
 
A
D
 
D
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R
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Q
A
 
A
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D
D
 
I
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T
F
 
Y
N
 
R
M
 
Y
F
 
F
F
 
E
F
 
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I
 
Y
L
 
I
I
 
I
A
 
I
A
 
A
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A
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I
Y
 
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F
A
 
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T
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L
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L
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F
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E
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R
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
33% identity, 93% coverage: 6:219/229 of query aligns to 11:213/214 of 4ymwC

query
sites
4ymwC
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P
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M
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L
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F
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A
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A
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F
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R
R
 
R

Query Sequence

>H281DRAFT_06474 H281DRAFT_06474 amino acid ABC transporter membrane protein 1, PAAT family
VVLYGFGPVLLAGTIQTVELSVLSLAAAVVLGLAGAAAKLSFNRPLRALATGYTTLIRSV
PDLVLMLLLFYSIQIAVNNLTDALNLPQFDIDPFVAGVLTLGFIYGAYFTETFRGAFLAV
PRGQLEAGSAYGMSGVRVFARILFPQMMRFALPGIGNNWQVLVKATALVSIIGLADVVKA
AQDAGKSTFNMFFFILIAALIYLALTTVSNLALIWLERRYSIGVRHAEL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory