SitesBLAST – Find functional sites

 

SitesBLAST

Comparing H281DRAFT_06480 FitnessBrowser__Burk376:H281DRAFT_06480 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1yleA The structure of arginine/ornithine succinyltransferase subunit ai from pseudomonas aeruginosa.
34% identity, 99% coverage: 1:340/345 of query aligns to 3:328/330 of 1yleA

query
sites
1yleA
M
 
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E
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A
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A
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E
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E
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D
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Query Sequence

>H281DRAFT_06480 FitnessBrowser__Burk376:H281DRAFT_06480
MIVVRVVQRGDVDALMRLAQETGPGLTTFKPDRDALAARVERARRTMEDKAEPHEAGYFF
VMEDTATGDVAGVCGIETAVGLQQPFYNYRVSTVVHASQDLGIWTRMRALNISHDLTGYA
EVCSLFLSPRYRTSGVGGLLSRSRFMFLAQFRERFPQRLCAELRGHFDAEGTSPFWRAVG
SHFYQIDFNAADYLSSHGRKAFLAELMPRYPVYVELLPQEAQECVGLTHNDTIPARRMLE
AEGLRYENHVDIFDAGPVLECHISDLRTVRESVLVPVEIADVPEGAAQDAPRSMVSNTSL
GDFRVGVAAGVPQDGVFRMNATEAAALGVKAGDPVRVLALKHKQG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory