Comparing HSERO_RS00895 HSERO_RS00895 ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
35% identity, 98% coverage: 2:252/255 of query aligns to 1:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
35% identity, 98% coverage: 2:252/255 of query aligns to 1:253/253 of 1g9xB
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
33% identity, 97% coverage: 5:252/255 of query aligns to 2:235/240 of 6mjpA
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 95% coverage: 8:249/255 of query aligns to 6:237/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 95% coverage: 8:249/255 of query aligns to 6:237/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 95% coverage: 8:249/255 of query aligns to 6:237/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
33% identity, 95% coverage: 8:249/255 of query aligns to 6:237/353 of Q97UY8
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
29% identity, 97% coverage: 6:252/255 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
29% identity, 97% coverage: 6:252/255 of query aligns to 3:235/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
29% identity, 97% coverage: 6:252/255 of query aligns to 3:235/235 of 6mhzA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
30% identity, 98% coverage: 3:252/255 of query aligns to 2:239/501 of P04983
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
31% identity, 99% coverage: 1:253/255 of query aligns to 2:239/240 of 1ji0A
6mbnA Lptb e163q in complex with atp (see paper)
29% identity, 97% coverage: 6:252/255 of query aligns to 4:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
29% identity, 96% coverage: 6:251/255 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
29% identity, 96% coverage: 6:251/255 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
29% identity, 96% coverage: 6:250/255 of query aligns to 3:233/233 of 6b8bA
3d31A Modbc from methanosarcina acetivorans (see paper)
31% identity, 95% coverage: 5:245/255 of query aligns to 1:220/348 of 3d31A
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 94% coverage: 5:244/255 of query aligns to 1:232/343 of P30750
Sites not aligning to the query:
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
31% identity, 94% coverage: 2:241/255 of query aligns to 1:229/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
31% identity, 94% coverage: 2:241/255 of query aligns to 1:229/263 of 7d08B
>HSERO_RS00895 HSERO_RS00895 ABC transporter
MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG
TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH
KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP
AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV
QKNPAVIEAYLGAGH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory