Comparing HSERO_RS04135 FitnessBrowser__HerbieS:HSERO_RS04135 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
P54955 N-acetylcysteine deacetylase; S-(2-succino)cysteine metabolism operon protein P; EC 3.5.1.- from Bacillus subtilis (strain 168)
37% identity, 94% coverage: 17:393/402 of query aligns to 10:371/380 of P54955
O04373 IAA-amino acid hydrolase ILR1-like 4; jasmonoyl-L-amino acid hydrolase; EC 3.5.1.-; EC 3.5.1.127 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
37% identity, 95% coverage: 17:398/402 of query aligns to 48:423/440 of O04373
P54968 IAA-amino acid hydrolase ILR1; EC 3.5.1.- from Arabidopsis thaliana (Mouse-ear cress) (see paper)
36% identity, 94% coverage: 20:398/402 of query aligns to 55:427/442 of P54968
4ewtA The crystal structure of a putative aminohydrolase from methicillin resistant staphylococcus aureus (see paper)
33% identity, 85% coverage: 13:355/402 of query aligns to 12:353/389 of 4ewtA
Sites not aligning to the query:
6slfA Nalpha-acylglutamine aminoacylase from corynebacterium sp.Releasing human axilla odorants co-crystallised with high affinity inhibitor (see paper)
35% identity, 80% coverage: 20:339/402 of query aligns to 22:343/398 of 6slfA
Sites not aligning to the query:
3ramA Crystal structure of hmra (see paper)
24% identity, 65% coverage: 18:279/402 of query aligns to 19:261/391 of 3ramA
Sites not aligning to the query:
>HSERO_RS04135 FitnessBrowser__HerbieS:HSERO_RS04135
MDIVNDGIKELPKEMDLVSIRRHLHAHPELRFEEKRTASFVADMLRSYGLTVAENIGGYG
VVATLRKGKSTRAIALRADMDALPMSEQNDFSHISTCAGKMHACGHDGHTTMLLGAARRL
SREVEFDGTVHFVFQPAEEGGAGARLMIEDGLFERFPADAIFGVHNWPGLPAGSFGLRPG
PLMASSNTFSATLFGRGAHGAQPHRSIDPVLAAAQLTLAWQSIVTRNINPNHRAVISVTQ
LHTGTADNVIPEQATLSGTVRSFDAETLDLIEHRMAAIAEAIGQMFDLRVQFHFERLYPA
VVNHPEATQQAMQAMMAAVGAEQVDGDTEPAFASEDFAFYLQHKPGCYAFLGNGVIADGK
QAGSQATSRELHSPFYDFNDDIIDAGVAYWVSLVRQYLGVAA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory