Comparing HSERO_RS04870 FitnessBrowser__HerbieS:HSERO_RS04870 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
Q7LYW7 Trehalose/maltose-binding protein MalE; TMBP from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see paper)
26% identity, 62% coverage: 166:524/582 of query aligns to 136:448/450 of Q7LYW7
Sites not aligning to the query:
1eu8A Structure of trehalose maltose binding protein from thermococcus litoralis (see paper)
24% identity, 70% coverage: 116:524/582 of query aligns to 52:407/407 of 1eu8A
Sites not aligning to the query:
5iaiA Crystal structure of abc transporter solute binding protein arad_9887 from agrobacterium radiobacter k84, target efi-510945 in complex with ribitol
22% identity, 73% coverage: 90:512/582 of query aligns to 24:389/399 of 5iaiA
Sites not aligning to the query:
>HSERO_RS04870 FitnessBrowser__HerbieS:HSERO_RS04870
MMQNMRKIKLTVLAAAMVMAGVAGNAWADIKAAEKWVDSEFQPSTLSRPQQVSEMQWFID
AAAKLKAKGVKEIHVVSETLDTHAYESKTLAKAFEEITGIKVIHDVIQEGDVVEKMQTSL
QSGKSIYDGWVNDSDLIGTHYRNGQTVVLTDYMAGPGKEYTNPGLDLKDFIGTSFTTAPD
GKLYQLPDQQFANLYWFRADWFARKDLQEKFKAKYGYELGVPQNWSAYEDIAAFFTNDVK
ELDGKKIYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPV
GASVARGGATNSPAAVYALTKYLDWMKKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYSA
FTASMTKQGLPVVNADGSPKWRMAPGPHGPYWKDGMQNGYQDVGSWTFLKSTPPDQMAAA
WLYAQFTTSKTVSLKKSIVGVTFIRDSDIRSDYFTKNAAKYGGLIEFYRSPARVAWTPTG
TNVPDYPKMAQIWWKNISSAISGEKTPQGAMDNLADEMDGIMARLQRAGMKQCAPKLNPK
KDPATWLSDKGAPWAKLANEKPKGETIPYDKLLQAWKDGRVR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory