Comparing HSERO_RS04975 FitnessBrowser__HerbieS:HSERO_RS04975 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
24% identity, 86% coverage: 8:193/217 of query aligns to 14:195/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
24% identity, 86% coverage: 8:193/217 of query aligns to 14:195/214 of 4ymwC
A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
33% identity, 55% coverage: 54:173/217 of query aligns to 56:165/506 of A0A0H2ZQB9
Sites not aligning to the query:
>HSERO_RS04975 FitnessBrowser__HerbieS:HSERO_RS04975
MSSELIDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLV
NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV
EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG
YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory