SitesBLAST – Find functional sites

 

SitesBLAST

Comparing HSERO_RS05265 FitnessBrowser__HerbieS:HSERO_RS05265 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4dlfA Crystal structure of an amidohydrolase (cog3618) from burkholderia multivorans (target efi-500235) with bound zn, space group p3221
68% identity, 98% coverage: 5:288/289 of query aligns to 3:286/287 of 4dlfA

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4dlfA
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Query Sequence

>HSERO_RS05265 FitnessBrowser__HerbieS:HSERO_RS05265
MKPPRIDAHQHFWFYQPQAYPWIGAGMELLACDRTPGQLQPLLDAEGLGQSIAVQARAGR
EETGFLLELARGNRRIAGVVGWEDLASPHLAANVERWGRDKLVGFRHQLQDEADVGGCVD
APAFNAGVAWLQRQGMVYDVLVYARQMAEVQAFCARHDRHWLVLDHLGKPALTEFGRGDT
AFEGWQRQLRALAALPHVACKLSGLVTEADWQRGLRQKDFDNISLCLDTALEAFGPQRLM
FGSDWPVCLLAASYAKVAGVVREWAATRLSAAEQELLWGATAARCYGLA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory