SitesBLAST – Find functional sites

 

SitesBLAST

Comparing HSERO_RS06530 FitnessBrowser__HerbieS:HSERO_RS06530 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3zo7B Crystal structure of clcfe27a with substrate (see paper)
46% identity, 98% coverage: 1:93/95 of query aligns to 1:93/94 of 3zo7B

query
sites
3zo7B
M
 
M
L
 
L
F
 
Y
M
 
L
V
 
V
Q
 
R
M
 
M
Q
 
T
V
 
V
N
 
N
I
 
L
P
 
P
A
 
R
T
 
N
L
 
L
D
 
D
K
 
P
A
 
R
V
 
E
A
 
E
D
 
E
Q
 
R
L
 
L
K
 
K
K
 
A
D
 
S
E
x
A
K
 
K
E
 
A
M
 
R
S
 
S
Q
 
R
K
 
T
L
 
L
Q
 
Q
R
 
E
E
 
Q
G
 
G
K
 
Q
W
 
W
R
 
R
D
 
Y
L
 
L
W
 
W
R
|
R
V
 
T
V
 
T
G
 
G
Q
 
K
Y
 
Y
A
 
G
N
|
N
V
 
I
S
 
S
I
 
V
F
 
F
N
 
D
V
 
V
S
 
N
G
 
S
N
 
H
D
 
D
E
 
E
L
 
L
H
 
H
N
 
E
I
 
I
L
 
L
S
 
W
A
 
S
L
 
L
P
 
P
L
x
F
Y
 
F
P
 
P
F
 
Y
M
 
L
T
 
T
I
 
I
S
 
D
V
 
V
T
 
E
P
 
P
L
 
L
T
 
S
Q
 
H
H
 
H
P
 
P
S
 
A
A
 
R
I
 
V
A
 
G
Q
 
K

Query Sequence

>HSERO_RS06530 FitnessBrowser__HerbieS:HSERO_RS06530
MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG
NDELHNILSALPLYPFMTISVTPLTQHPSAIAQIG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory