SitesBLAST – Find functional sites

 

SitesBLAST

Comparing HSERO_RS06570 FitnessBrowser__HerbieS:HSERO_RS06570 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 11 hits to proteins with known functional sites (download)

3k0tC Crystal structure of pspto -psp protein in complex with d-beta-glucose from pseudomonas syringae pv. Tomato str. Dc3000 (see paper)
45% identity, 68% coverage: 21:114/138 of query aligns to 16:109/124 of 3k0tC

query
sites
3k0tC
Y
|
Y
A
 
S
P
 
Q
A
 
A
V
 
I
R
 
K
V
 
A
G
 
G
Q
 
N
V
 
T
L
 
V
Y
 
Y
V
 
M
S
 
S
G
|
G
Q
 
Q
I
|
I
G
 
P
R
 
L
G
 
D
P
 
P
D
 
S
-
 
T
M
 
M
Q
 
E
L
 
L
V
 
V
E
 
E
P
 
G
R
 
I
E
 
E
A
 
A
Q
 
Q
I
 
I
V
 
T
Q
 
Q
A
 
V
F
 
F
E
 
E
N
 
N
L
 
L
K
 
K
L
 
S
V
 
V
L
 
A
A
 
Q
T
 
A
A
 
A
G
 
G
G
 
G
T
 
S
L
 
F
D
 
K
D
 
D
I
 
I
V
 
V
D
 
K
L
 
L
T
 
N
T
 
I
F
 
F
H
 
L
T
 
T
D
 
D
M
 
L
R
 
G
D
 
H
L
x
F
P
 
A
L
 
K
F
 
V
I
 
N
K
 
E
V
 
I
R
 
M
N
 
G
R
 
S
Y
 
Y
L
 
F
S
 
S
H
 
Q
Y
 
-
P
 
P
L
 
Y
P
 
P
A
 
A
W
x
R
T
 
A
A
 
A
I
 
I
G
 
G
A
 
V
H
 
A
M
 
A
L
 
L

Sites not aligning to the query:

A0A1J1DL12 2-iminobutanoate/2-iminopropanoate deaminase; Allergen Der f 34; Enamine/imine deaminase; Allergen Der f 34.0101; EC 3.5.99.10 from Dermatophagoides farinae (American house dust mite) (see paper)
33% identity, 68% coverage: 21:114/138 of query aligns to 19:113/128 of A0A1J1DL12

query
sites
A0A1J1DL12
Y
|
Y
A
 
S
P
 
Q
A
 
A
V
 
V
R
 
Q
V
 
V
G
 
G
Q
 
N
V
 
T
L
 
V
Y
 
Y
V
 
L
S
 
S
G
|
G
Q
 
Q
I
 
I
G
 
G
-
 
M
-
 
N
-
 
V
R
 
R
G
 
T
P
 
N
D
 
E
M
 
M
Q
 
-
L
 
V
V
 
T
E
 
G
P
 
P
R
 
I
E
 
R
A
 
D
Q
 
E
I
 
A
V
 
Q
Q
 
Q
A
 
A
F
 
F
E
 
T
N
|
N
L
 
M
K
 
K
L
 
A
V
 
V
L
 
V
A
 
E
T
 
A
A
 
S
G
 
G
G
 
A
T
 
K
L
 
M
D
 
S
D
 
D
I
 
V
V
 
V
D
 
K
L
 
V
T
 
N
T
 
I
F
 
F
H
 
I
T
 
R
D
 
N
M
 
F
R
 
N
D
 
D
L
 
F
P
 
P
L
 
A
F
 
I
I
x
N
K
 
D
V
 
V
R
 
M
N
 
K
R
 
E
Y
 
F
L
 
F
S
 
-
H
 
Q
Y
 
S
P
 
P
L
 
F
P
 
P
A
 
A
W
x
R
T
 
S
A
 
T
I
 
V
G
 
G
A
 
V
H
 
A
M
 
E
L
 
L

Sites not aligning to the query:

2b33B Crystal structure of a putative endoribonuclease (tm0215) from thermotoga maritima msb8 at 2.30 a resolution
36% identity, 78% coverage: 21:128/138 of query aligns to 16:122/126 of 2b33B

query
sites
2b33B
Y
 
Y
A
 
S
P
 
Q
A
 
A
V
 
V
R
 
V
V
 
V
G
 
G
Q
 
N
V
 
M
L
 
M
Y
 
F
V
 
V
S
 
S
G
 
G
Q
 
Q
I
 
I
G
 
P
R
 
I
G
x
D
P
 
P
D
x
E
M
 
T
-
 
G
Q
 
E
L
 
L
V
 
V
E
 
Q
P
 
G
R
 
T
-
 
I
E
 
E
A
 
E
Q
 
K
I
 
T
V
 
E
Q
 
R
A
 
V
F
 
L
E
 
E
N
 
N
L
 
L
K
 
K
L
 
A
V
 
I
L
 
L
A
 
E
T
 
A
A
 
G
G
 
G
G
 
F
T
 
S
L
 
L
D
 
K
D
 
D
I
 
V
V
 
V
D
 
K
L
 
V
T
 
T
T
 
V
F
 
F
H
 
T
T
 
T
D
 
S
M
 
M
R
 
D
D
 
Y
L
 
F
P
 
Q
L
 
R
F
 
V
I
 
N
K
 
E
V
 
V
R
 
Y
N
 
S
R
 
R
Y
 
Y
L
 
F
-
 
G
S
 
D
H
 
H
Y
 
R
P
 
P
L
 
A
P
 
R
A
 
S
W
 
F
T
 
V
A
 
A
I
 
V
G
 
A
A
 
Q
H
 
-
M
 
-
L
 
-
G
 
-
G
 
-
A
 
L
P
 
P
G
 
R
Y
 
N
V
 
V
-
 
E
I
 
I
E
 
E
I
 
I
K
 
E
A
 
A
V
 
I
A
 
A

5v4dA Crystal structure of the protein of unknown function of the conserved rid protein family yyfa from yersinia pestis
33% identity, 78% coverage: 21:128/138 of query aligns to 18:125/127 of 5v4dA

query
sites
5v4dA
Y
 
Y
A
 
S
P
 
Q
A
 
A
V
 
I
R
 
C
V
 
F
G
 
N
Q
 
G
V
 
I
L
 
L
Y
 
Y
V
 
A
S
 
S
G
 
G
Q
 
Q
I
 
I
G
 
P
R
 
I
G
 
N
P
 
P
D
 
D
M
 
T
-
 
G
Q
 
D
L
 
L
V
 
V
E
 
E
P
 
N
R
 
D
-
 
I
E
 
E
A
 
K
Q
 
Q
I
 
T
V
 
R
Q
 
Q
A
 
V
F
 
L
E
 
K
N
 
N
L
 
I
K
 
D
L
 
A
V
 
V
L
 
L
A
 
L
T
 
Q
A
 
A
G
 
G
G
 
T
T
 
T
L
 
K
D
 
D
D
 
K
I
 
I
V
 
V
D
 
K
L
 
T
T
 
T
T
 
I
F
 
F
H
 
I
T
 
T
D
 
N
M
 
I
R
 
N
D
 
N
L
 
S
P
 
S
L
 
Q
F
 
V
I
 
N
K
x
D
V
 
I
R
 
Y
N
 
A
R
x
D
Y
 
Y
L
 
F
S
 
K
H
 
G
Y
 
T
P
 
I
L
 
F
P
 
P
A
 
A
W
 
R
T
 
S
A
 
T
I
 
V
G
 
E
A
 
V
H
 
S
M
 
A
L
 
L
G
 
-
G
 
-
A
 
P
P
 
K
G
 
G
Y
 
A
V
 
L
I
 
V
E
 
E
I
 
I
K
 
E
A
 
V
V
 
I
A
 
A

P52759 2-iminobutanoate/2-iminopropanoate deaminase; Liver perchloric acid-soluble protein; L-PSP; Reactive intermediate imine deaminase A homolog; Translation inhibitor L-PSP ribonuclease; UK114 antigen homolog; rp14.5; EC 3.5.99.10 from Rattus norvegicus (Rat) (see paper)
34% identity, 81% coverage: 21:132/138 of query aligns to 21:131/137 of P52759

query
sites
P52759
Y
 
Y
A
 
S
P
 
Q
A
 
A
V
 
V
R
 
L
V
 
V
G
 
D
Q
 
R
V
 
T
L
 
I
Y
 
Y
V
 
V
S
 
S
G
 
G
Q
 
Q
I
 
I
G
 
G
R
 
M
G
 
D
P
 
P
D
 
S
M
 
S
Q
 
G
L
 
Q
V
 
L
E
 
V
P
 
P
-
 
G
-
 
G
-
 
V
-
 
A
R
 
E
E
 
E
A
 
A
Q
 
K
I
 
-
V
 
-
Q
 
Q
A
 
A
F
 
L
E
 
K
N
 
N
L
 
L
K
 
G
L
 
E
V
 
I
L
 
L
A
 
K
T
 
A
A
 
A
G
 
G
G
 
C
T
 
D
L
 
F
D
 
T
D
 
N
I
 
V
V
 
V
D
 
K
L
 
T
T
 
T
T
 
V
F
 
L
H
 
L
T
 
A
D
 
D
M
 
I
R
 
N
D
 
D
L
 
-
P
 
-
L
 
-
F
 
F
I
 
G
K
 
T
V
 
V
R
 
N
N
 
E
R
 
I
Y
 
Y
L
 
K
S
 
T
H
 
Y
Y
 
F
P
 
Q
-
 
G
-
 
N
L
 
L
P
 
P
A
 
A
W
 
R
T
 
-
A
 
-
I
 
-
G
 
A
A
 
A
H
 
Y
M
 
Q
L
 
V
G
 
A
G
 
A
A
 
L
P
 
P
-
 
K
G
 
G
Y
 
S
V
 
R
I
 
I
E
 
E
I
 
I
K
 
E
A
 
A
V
 
I
A
 
A
H
 
V
L
 
Q
R
 
G
P
 
P

Sites not aligning to the query:

7cd4A Crystal structure of the s103f mutant of bacillus subtilis (natto) yabj protein. (see paper)
33% identity, 59% coverage: 21:102/138 of query aligns to 16:99/124 of 7cd4A

query
sites
7cd4A
Y
 
Y
A
 
S
P
 
Q
A
 
G
V
 
I
R
 
I
V
 
V
G
 
N
Q
 
N
V
 
M
L
 
F
Y
 
Y
V
 
S
S
 
S
G
 
G
Q
 
Q
I
 
I
G
 
P
R
 
L
G
 
T
P
 
P
D
 
S
M
 
G
Q
 
E
L
 
M
V
 
V
E
 
N
-
 
G
P
 
D
R
 
I
E
 
K
A
x
E
Q
 
Q
I
 
T
V
 
H
Q
 
Q
A
 
V
F
 
F
E
 
S
N
 
N
L
 
L
K
 
K
L
 
A
V
 
V
L
 
L
A
 
E
T
 
E
A
 
A
G
 
G
G
 
A
T
 
S
L
 
F
D
 
E
D
 
T
I
 
V
V
 
V
D
 
K
L
 
A
T
 
T
T
 
V
F
 
F
H
 
I
T
 
A
D
 
D
M
 
M
R
 
E
D
 
Q
L
 
F
P
 
A
L
 
E
F
 
V
I
 
N
K
 
E
V
 
V
R
 
Y
N
 
G
R
 
Q
Y
 
Y
L
 
F
-
 
D
S
 
T
H
 
H
Y
 
K
P
 
P

Sites not aligning to the query:

P80601 2-iminobutanoate/2-iminopropanoate deaminase; 14.3 kDa perchloric acid soluble protein; Translation inhibitor L-PSP ribonuclease; UK114 antigen; EC 3.5.99.10; EC 3.1.-.- from Capra hircus (Goat) (see paper)
31% identity, 78% coverage: 21:128/138 of query aligns to 21:127/137 of P80601

query
sites
P80601
Y
 
Y
A
 
S
P
 
Q
A
 
A
V
 
V
R
 
L
V
 
V
G
 
D
Q
 
R
V
 
T
L
 
I
Y
 
Y
V
 
I
S
 
S
G
 
G
Q
 
Q
I
 
L
G
 
G
R
 
M
G
 
D
P
 
P
D
 
A
M
 
S
Q
 
G
L
 
Q
V
 
L
E
 
V
P
 
P
-
 
G
-
 
G
-
 
V
-
 
V
R
 
E
E
 
E
A
 
A
Q
 
K
I
 
-
V
 
-
Q
 
Q
A
 
A
F
 
L
E
 
T
N
 
N
L
 
I
K
 
G
L
 
E
V
 
I
L
 
L
A
 
K
T
 
A
A
 
A
G
 
G
G
 
C
T
 
D
L
 
F
D
 
T
D
 
N
I
 
V
V
 
V
D
 
K
L
 
A
T
 
T
T
 
V
F
 
L
H
 
L
T
 
A
D
 
D
M
 
I
R
 
N
D
 
D
L
 
F
P
 
S
L
 
A
F
 
V
I
 
N
K
 
D
V
 
V
R
 
Y
N
 
K
R
 
Q
Y
 
Y
L
 
F
-
 
Q
S
 
S
H
 
S
Y
 
F
P
 
P
L
 
A
P
 
R
A
 
A
W
 
A
T
 
Y
A
 
Q
I
 
V
G
 
A
A
 
A
H
 
L
M
 
P
L
 
K
G
 
G
G
 
G
A
 
R
P
 
-
G
 
-
Y
 
-
V
 
-
I
 
V
E
 
E
I
 
I
K
 
E
A
 
A
V
 
I
A
 
A

Sites not aligning to the query:

3vczB 1.80 angstrom resolution crystal structure of a putative translation initiation inhibitor from vibrio vulnificus cmcp6
31% identity, 78% coverage: 21:128/138 of query aligns to 16:125/127 of 3vczB

query
sites
3vczB
Y
 
Y
A
 
I
P
 
Q
A
 
G
V
 
V
R
 
D
V
 
L
G
 
G
Q
 
N
V
 
M
L
 
V
Y
 
L
V
 
T
S
 
S
G
 
G
Q
 
Q
I
 
I
G
 
P
R
 
V
G
 
N
P
 
P
D
 
A
M
 
T
Q
 
G
L
 
E
V
 
V
E
 
-
P
 
P
R
 
A
E
 
D
-
 
I
-
 
A
A
 
A
Q
 
Q
I
 
A
V
 
R
Q
 
Q
A
 
S
F
 
L
E
 
D
N
 
N
L
 
V
K
 
K
L
 
A
V
 
V
L
 
V
A
 
E
T
 
A
A
 
S
G
 
G
G
 
L
T
 
T
L
 
V
D
 
G
D
 
D
I
 
I
V
 
V
D
 
K
L
 
M
T
 
T
T
 
V
F
 
F
H
 
V
T
 
K
D
|
D
M
 
L
R
x
N
D
 
D
L
 
F
P
 
G
L
 
T
F
 
V
I
 
N
K
 
E
V
 
V
R
 
Y
N
 
G
R
 
N
Y
 
F
L
 
F
S
 
D
H
 
E
Y
 
H
P
 
N
L
 
V
P
 
A
A
 
H
W
 
Y
T
 
P
A
 
A
I
 
R
G
 
S
A
 
C
H
 
V
M
 
E
L
 
V
G
 
A
G
 
R
A
 
L
P
 
P
G
 
K
Y
 
D
V
 
V
-
 
G
I
 
I
E
 
E
I
 
I
K
 
E
A
 
A
V
 
I
A
 
A

2uynA Crystal structure of e. Coli tdcf with bound 2-ketobutyrate (see paper)
27% identity, 59% coverage: 21:101/138 of query aligns to 16:97/127 of 2uynA

query
sites
2uynA
Y
 
Y
A
 
V
P
 
Q
A
 
G
V
 
V
R
 
D
V
 
L
G
 
G
Q
 
S
V
 
M
L
 
V
Y
 
F
V
 
T
S
 
S
G
 
G
Q
 
Q
I
 
I
G
 
P
R
 
V
G
 
C
P
 
P
D
 
Q
M
 
T
-
 
G
Q
 
E
L
 
I
V
 
P
E
 
A
P
 
D
R
 
V
E
 
Q
A
 
D
Q
 
Q
I
 
A
V
 
R
Q
 
L
A
 
S
F
 
L
E
 
E
N
 
N
L
 
V
K
 
K
L
 
A
V
 
I
L
 
V
A
 
V
T
 
A
A
 
A
G
 
G
G
 
L
T
 
S
L
 
V
D
 
G
D
 
D
I
 
I
V
 
I
D
 
K
L
 
M
T
 
T
T
 
V
F
 
F
H
 
I
T
 
T
D
 
D
M
 
L
R
 
N
D
 
D
L
x
F
P
 
A
L
 
T
F
 
I
I
 
N
K
 
E
V
 
V
R
 
Y
N
 
K
R
 
Q
Y
 
F
L
 
F
S
 
D
H
 
E
Y
 
H

Sites not aligning to the query:

2uykC Crystal structure of e. Coli tdcf with bound serine (see paper)
27% identity, 59% coverage: 21:101/138 of query aligns to 16:97/127 of 2uykC

query
sites
2uykC
Y
 
Y
A
 
V
P
 
Q
A
 
G
V
 
V
R
 
D
V
 
L
G
 
G
Q
 
S
V
 
M
L
 
V
Y
 
F
V
 
T
S
 
S
G
 
G
Q
 
Q
I
 
I
G
 
P
R
 
V
G
 
C
P
 
P
D
 
Q
M
 
T
-
 
G
Q
 
E
L
 
I
V
 
P
E
 
A
P
 
D
R
 
V
E
 
Q
A
 
D
Q
 
Q
I
 
A
V
 
R
Q
 
L
A
 
S
F
 
L
E
 
E
N
 
N
L
 
V
K
 
K
L
 
A
V
 
I
L
 
V
A
 
V
T
 
A
A
 
A
G
 
G
G
 
L
T
 
S
L
 
V
D
 
G
D
 
D
I
 
I
V
 
I
D
 
K
L
 
M
T
 
T
T
 
V
F
 
F
H
 
I
T
 
T
D
 
D
M
 
L
R
 
N
D
 
D
L
 
F
P
 
A
L
 
T
F
 
I
I
 
N
K
 
E
V
 
V
R
 
Y
N
 
K
R
 
Q
Y
 
F
L
 
F
S
 
D
H
 
E
Y
 
H

Sites not aligning to the query:

P0AFQ5 3-aminoacrylate deaminase RutC; 3-AA deaminase; EC 3.5.-.- from Escherichia coli (strain K12) (see paper)
25% identity, 92% coverage: 4:130/138 of query aligns to 3:126/128 of P0AFQ5

query
sites
P0AFQ5
R
 
K
Q
 
S
A
 
V
I
 
I
I
 
I
P
 
P
K
 
A
G
 
G
M
 
S
E
 
S
D
 
A
V
 
P
Y
 
L
E
 
A
K
 
P
I
 
-
G
 
-
Y
 
F
A
 
V
P
 
P
A
 
G
V
 
T
R
 
L
V
 
A
G
 
D
Q
 
G
V
 
V
L
 
V
Y
 
Y
V
 
V
S
 
S
G
 
G
Q
 
T
I
 
L
G
 
A
-
 
F
-
 
D
R
 
Q
G
 
H
P
 
N
D
 
N
M
 
V
Q
 
L
L
 
F
V
 
A
E
 
D
P
 
D
R
 
P
E
 
K
A
 
A
Q
 
Q
I
 
T
V
 
R
Q
 
H
A
 
V
F
 
L
E
 
E
N
 
T
L
 
I
K
 
R
L
 
K
V
 
V
L
 
I
A
 
E
T
 
T
A
 
A
G
 
G
G
 
G
T
 
T
L
 
M
D
 
A
D
 
D
I
 
V
V
 
T
D
 
F
L
 
N
T
 
S
T
 
I
F
 
F
H
 
I
T
 
T
D
 
D
M
 
W
R
 
K
D
 
N
L
 
-
P
 
-
L
 
-
F
 
Y
I
 
A
K
 
A
V
 
I
R
 
N
N
 
E
R
 
I
Y
 
Y
L
 
A
S
 
E
H
 
F
Y
 
F
P
 
P
-
 
G
-
 
D
L
 
K
P
 
P
A
 
A
W
x
R
T
 
F
A
 
C
I
 
I
G
 
Q
A
 
C
H
 
G
M
 
L
L
 
V
G
 
-
G
 
-
A
 
K
P
 
P
G
 
D
Y
 
A
V
 
L
I
 
V
E
 
E
I
 
I
K
 
A
A
 
T
V
 
I
A
 
A
H
 
H
L
 
I

Query Sequence

>HSERO_RS06570 FitnessBrowser__HerbieS:HSERO_RS06570
MSDRQAIIPKGMEDVYEKIGYAPAVRVGQVLYVSGQIGRGPDMQLVEPREAQIVQAFENL
KLVLATAGGTLDDIVDLTTFHTDMRDLPLFIKVRNRYLSHYPLPAWTAIGAHMLGGAPGY
VIEIKAVAHLRPAGGGAS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory