Comparing HSERO_RS06785 HSERO_RS06785 metal-dependent hydrolase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
51% identity, 95% coverage: 5:240/249 of query aligns to 6:240/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 94% coverage: 5:238/249 of query aligns to 2:235/240 of 6mjpA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 94% coverage: 4:238/249 of query aligns to 3:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 94% coverage: 4:238/249 of query aligns to 3:253/253 of 1g9xB
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
33% identity, 94% coverage: 5:238/249 of query aligns to 2:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
33% identity, 94% coverage: 5:238/249 of query aligns to 2:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
33% identity, 94% coverage: 5:238/249 of query aligns to 2:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
32% identity, 94% coverage: 5:238/249 of query aligns to 3:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
33% identity, 94% coverage: 5:237/249 of query aligns to 2:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
33% identity, 94% coverage: 5:237/249 of query aligns to 2:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
32% identity, 93% coverage: 5:236/249 of query aligns to 2:233/233 of 6b8bA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
28% identity, 89% coverage: 8:228/249 of query aligns to 4:225/240 of 4ymuJ
P55339 ABC-type transporter ATP-binding protein EcsA from Bacillus subtilis (strain 168) (see paper)
30% identity, 89% coverage: 5:226/249 of query aligns to 3:221/247 of P55339
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 85% coverage: 4:215/249 of query aligns to 2:220/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 85% coverage: 4:215/249 of query aligns to 2:220/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 85% coverage: 4:215/249 of query aligns to 2:220/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
28% identity, 85% coverage: 4:215/249 of query aligns to 2:220/242 of 2oljA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
31% identity, 80% coverage: 17:215/249 of query aligns to 259:471/501 of P04983
Sites not aligning to the query:
7ch6C Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
30% identity, 90% coverage: 4:226/249 of query aligns to 3:228/265 of 7ch6C
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state (see paper)
30% identity, 90% coverage: 4:226/249 of query aligns to 3:228/264 of 6xgyA
>HSERO_RS06785 HSERO_RS06785 metal-dependent hydrolase
MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSRGA
MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE
EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR
IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS
GKHQDKLAG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory