SitesBLAST – Find functional sites

 

SitesBLAST

Comparing HSERO_RS07530 FitnessBrowser__HerbieS:HSERO_RS07530 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
37% identity, 89% coverage: 19:211/216 of query aligns to 21:213/215 of 4ymtC

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4ymtC
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
37% identity, 89% coverage: 19:211/216 of query aligns to 21:213/214 of 4ymwC

query
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4ymwC
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Query Sequence

>HSERO_RS07530 FitnessBrowser__HerbieS:HSERO_RS07530
MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII
QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS
TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT
FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory