Comparing HSERO_RS08270 HSERO_RS08270 amino acid ABC transporter substrate-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1uskA L-leucine-binding protein with leucine bound (see paper)
53% identity, 93% coverage: 27:372/373 of query aligns to 1:345/345 of 1uskA
1usiA L-leucine-binding protein with phenylalanine bound (see paper)
53% identity, 93% coverage: 27:372/373 of query aligns to 1:345/345 of 1usiA
1z18A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound valine (see paper)
52% identity, 93% coverage: 27:373/373 of query aligns to 1:344/344 of 1z18A
1z17A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound ligand isoleucine (see paper)
52% identity, 93% coverage: 27:373/373 of query aligns to 1:344/344 of 1z17A
1z16A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound leucine (see paper)
52% identity, 93% coverage: 27:373/373 of query aligns to 1:344/344 of 1z16A
3ip9A Structure of atu2422-gaba receptor in complex with gaba (see paper)
44% identity, 90% coverage: 29:365/373 of query aligns to 3:337/348 of 3ip9A
3ip7A Structure of atu2422-gaba receptor in complex with valine (see paper)
44% identity, 90% coverage: 29:365/373 of query aligns to 3:337/348 of 3ip7A
3ip6A Structure of atu2422-gaba receptor in complex with proline (see paper)
44% identity, 90% coverage: 29:365/373 of query aligns to 3:337/348 of 3ip6A
3ip5A Structure of atu2422-gaba receptor in complex with alanine (see paper)
44% identity, 90% coverage: 29:365/373 of query aligns to 3:337/348 of 3ip5A
3ipcA Structure of atu2422-gaba f77a mutant receptor in complex with leucine (see paper)
44% identity, 90% coverage: 29:365/373 of query aligns to 3:337/348 of 3ipcA
4n0qB Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
45% identity, 90% coverage: 29:363/373 of query aligns to 3:337/345 of 4n0qB
4gnrA 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
33% identity, 80% coverage: 27:324/373 of query aligns to 1:298/348 of 4gnrA
3td9A Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
31% identity, 91% coverage: 28:368/373 of query aligns to 1:338/350 of 3td9A
4mlcA Abc transporter substrate-binding protein fromdesulfitobacterium hafniense
27% identity, 87% coverage: 27:352/373 of query aligns to 1:317/336 of 4mlcA
4q6bA Crystal structure of abc transporter substrate-binding protein fromdesulfitobacterium hafniense complex with leu
26% identity, 87% coverage: 27:352/373 of query aligns to 1:316/335 of 4q6bA
4q6wA Crystal structure of periplasmic binding protein type 1 from bordetella pertussis tohama i complexed with 3-hydroxy benzoic acid
26% identity, 83% coverage: 26:335/373 of query aligns to 1:332/376 of 4q6wA
3i45A Crystal structure of putative twin-arginine translocation pathway signal protein from rhodospirillum rubrum atcc 11170
25% identity, 80% coverage: 49:347/373 of query aligns to 24:328/378 of 3i45A
4rdcA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with proline
21% identity, 92% coverage: 28:369/373 of query aligns to 2:357/364 of 4rdcA
4qymA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with methionine
21% identity, 92% coverage: 28:369/373 of query aligns to 2:357/364 of 4qymA
4otzA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with cystein
21% identity, 92% coverage: 28:369/373 of query aligns to 2:357/364 of 4otzA
>HSERO_RS08270 HSERO_RS08270 amino acid ABC transporter substrate-binding protein
MKFASRLTKIALAAATFAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQIN
AAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGV
VMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQG
VASSVKAALDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQA
REQGIKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDPN
GPFQMPAYSGVKIIADAIAGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVV
FTWHKDASKTEAK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory