Comparing HSERO_RS08720 FitnessBrowser__HerbieS:HSERO_RS08720 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4v15A Crystal structure of d-threonine aldolase from alcaligenes xylosoxidans (see paper)
25% identity, 86% coverage: 46:416/430 of query aligns to 18:355/373 of 4v15A
7yqaB Crystal structure of d-threonine aldolase from chlamydomonas reinhardtii (see paper)
25% identity, 43% coverage: 45:227/430 of query aligns to 20:203/398 of 7yqaB
Sites not aligning to the query:
>HSERO_RS08720 FitnessBrowser__HerbieS:HSERO_RS08720
MNDTNYQGAYEAGIIDPLNKGLGPLPQALPPGQAGTVRWNLLNEDISLPAAVLYEEKIAH
NLKWMQEFVGQYQLKLAPHGKTTMAPKLFARQLDTGAWGITLATAHQTLAGYHHGVRRVI
MANQLVGKRNMAIISELLADPSFEFFCLVDSAALVDQLGRFFAERKQTLNVLLELGPTGG
RTGVRDEAQQQAVLEAISRWDSIALAGVEVYEGVLKEEVDIRRFLQRAVACLQDLAAQGQ
LARRLARGPAVLTGAGSAWYDVVAEEFGQADIGAALDVVLRPGCYLTHDVGIYRAAQAQI
QVRNPVAHSMRSQLQPALQLWAYVQSIPESDKAIIALGKRDAAFDAGLPMPVSRFRPGRD
TGPQATPAHWEVTGMMDQHAYLKIAAGDDIEVGDMIAFDISHPCLTFDKWRHLVVVDGRF
DVTDIVQTFF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory