Comparing HSERO_RS08920 HSERO_RS08920 ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
37% identity, 38% coverage: 392:639/655 of query aligns to 4:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
37% identity, 38% coverage: 392:640/655 of query aligns to 4:254/254 of 1g6hA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
30% identity, 40% coverage: 392:654/655 of query aligns to 4:254/501 of P04983
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 35% coverage: 405:633/655 of query aligns to 18:234/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
32% identity, 35% coverage: 405:633/655 of query aligns to 19:235/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 35% coverage: 405:633/655 of query aligns to 19:235/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 35% coverage: 405:633/655 of query aligns to 19:235/344 of 3tuiC
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 36% coverage: 395:627/655 of query aligns to 4:223/240 of 4ymuJ
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
29% identity, 38% coverage: 392:639/655 of query aligns to 6:238/240 of 1ji0A
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
29% identity, 37% coverage: 392:632/655 of query aligns to 2:228/241 of 4u00A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
26% identity, 38% coverage: 392:640/655 of query aligns to 2:236/240 of 6mjpA
Q5M244 Energy-coupling factor transporter ATP-binding protein EcfA2; ECF transporter A component EcfA2; EC 3.6.3.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
31% identity, 34% coverage: 406:627/655 of query aligns to 21:232/280 of Q5M244
3c4jA Abc protein artp in complex with atp-gamma-s
27% identity, 37% coverage: 392:632/655 of query aligns to 3:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
27% identity, 37% coverage: 392:632/655 of query aligns to 3:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
27% identity, 37% coverage: 392:632/655 of query aligns to 3:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
27% identity, 37% coverage: 392:632/655 of query aligns to 3:230/242 of 2oljA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
27% identity, 38% coverage: 390:639/655 of query aligns to 1:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
27% identity, 38% coverage: 390:640/655 of query aligns to 1:236/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
27% identity, 38% coverage: 390:640/655 of query aligns to 1:236/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
27% identity, 38% coverage: 390:640/655 of query aligns to 2:237/241 of 6mbnA
>HSERO_RS08920 HSERO_RS08920 ABC transporter
MNKKILLLSLLGIVALAGIPMVVHNPYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHA
GLFGIGSYAAGVLFFKLGMPIFVTVPAAIAVTAVFGAILALPALRVTGPYLAMVTLAFGT
IIQILINEMTFLTEGPLGIKLQKPMIGGDKMSEVQFFYLVAVLMVLSMLVVHRILKSNLG
RAFQALRDSPIASDCMGVSVYRYKVYAFIISAALAGLSGALYAYSEEYISPNTYNFELTI
MFLLAVIMGGRKSRIGSLIGALIVVMLPSLLSDIALFRQIATVLAVIVVVGAGVQVARKT
KTVRGVIVPVVATIAMAAFSYKLENITDWRLTIFGLMTLFVVYYLQDGIVGFCRTLFGRV
LTKHVPVAQQIAGDKERAVITTDSVKDAGATLLKVNQILMQFGGLKALNRVDLDVRKGTV
HGLIGPNGSGKSTMMNVLTGIYRPTDGVVEYDGRPISGNVPSAIALGGVARTFQNVQLFG
EMTATENVLVGLHHTFNSNVVDVMANTPRYVREEQAARERAAAILEFVGLANLANEEARN
LPYGKQRLLEIGRALGLNPSLLLLDEPAAGLTAPDIKELVAIIRKIREAGITIILIEHHM
DVVMSICDTVTVLDFGQKIAEGKPAQVQADPKVIEAYLGSGAGDAHDNTSSPAGA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory