Comparing HSERO_RS10555 FitnessBrowser__HerbieS:HSERO_RS10555 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
47% identity, 80% coverage: 28:158/163 of query aligns to 25:155/156 of 1nxjA
Sites not aligning to the query:
2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
41% identity, 99% coverage: 3:163/163 of query aligns to 2:157/158 of 2yjvC
>HSERO_RS10555 FitnessBrowser__HerbieS:HSERO_RS10555
MTFATCDLCDAHEDKLAAGTLHVLPPIFASFGRKQSFCGPARTLKVFEDNVLVRATLETP
GQGHVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATH
PQRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRSAL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory