Comparing HSERO_RS11185 FitnessBrowser__HerbieS:HSERO_RS11185 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
Q5L2C2 Glycine oxidase; GO; GOX; GOXK; EC 1.4.3.19 from Geobacillus kaustophilus (strain HTA426)
27% identity, 55% coverage: 177:409/423 of query aligns to 133:358/377 of Q5L2C2
Sites not aligning to the query:
4yshB Crystal structure of glycine oxidase from geobacillus kaustophilus
27% identity, 55% coverage: 177:409/423 of query aligns to 132:356/368 of 4yshB
Sites not aligning to the query:
4yshA Crystal structure of glycine oxidase from geobacillus kaustophilus
27% identity, 55% coverage: 177:409/423 of query aligns to 132:356/370 of 4yshA
Sites not aligning to the query:
>HSERO_RS11185 FitnessBrowser__HerbieS:HSERO_RS11185
VNSTHRQIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPL
TLPGALATFACRFQDEPRVLLASGADFGRRRWMRATRAAQQHHFAQHKLILSRLSAYGQD
LTQQLQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPA
FSSEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEV
QSPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYD
DSYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNS
IAMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIATAGLLPRD
VLG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory